#include <VoronoiDataWriter.hpp>
Inheritance diagram for VoronoiDataWriter< ELEMENT_DIM, SPACE_DIM >: Collaboration diagram for VoronoiDataWriter< ELEMENT_DIM, SPACE_DIM >:Public Member Functions | |
| VoronoiDataWriter () | |
| virtual void | Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| virtual void | Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation) |
| Public Member Functions inherited from AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > | |
| AbstractCellPopulationWriter (const std::string &rFileName) | |
| virtual void | WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation) |
| Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
| AbstractCellBasedWriter (const std::string &rFileName) | |
| virtual | ~AbstractCellBasedWriter () |
| void | CloseFile () |
| virtual void | OpenOutputFile (OutputFileHandler &rOutputFileHandler) |
| void | OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler) |
| virtual void | WriteTimeStamp () |
| virtual void | WriteNewline () |
| void | SetFileName (std::string fileName) |
| std::string | GetFileName () |
| Public Member Functions inherited from Identifiable | |
| virtual | ~Identifiable () |
| std::string | GetIdentifier () const |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Additional Inherited Members | |
| Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM > | |
| std::string | mFileName |
| out_stream | mpOutStream |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class VoronoiDataWriter< ELEMENT_DIM, SPACE_DIM >
A class written using the visitor pattern for writing Voronoi data from a cell population to file.
The output file is called voronoi.dat by default.
Definition at line 49 of file VoronoiDataWriter.hpp.
Constructor & Destructor Documentation
| VoronoiDataWriter< ELEMENT_DIM, SPACE_DIM >::VoronoiDataWriter | ( | ) |
Default constructor.
Definition at line 45 of file VoronoiDataWriter.cpp.
Member Function Documentation
|
inlineprivate |
Serialize the object and its member variables.
- Parameters
-
archive the archive version the current version of this class
Definition at line 61 of file VoronoiDataWriter.hpp.
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virtual |
Visit the MeshBasedCellPopulation and write the index and location of each node, as well as the volume and surface area (area and perimeter in 2 dimensions) of the corresponding element in the dual Voronoi tessellation.
Outputs a line of space-separated values of the form: ...[node index] [node x-pos] [node y-pos] [node z-pos] [elem volume] [elem surface area] ...
This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.
- Parameters
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pCellPopulation a pointer to the MeshBasedCellPopulation to visit.
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 51 of file VoronoiDataWriter.cpp.
References VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetDelaunayNodeIndexCorrespondingToVoronoiElementIndex(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorBegin(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetElementIteratorEnd(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNode(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetSurfaceAreaOfElement(), VertexMesh< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfElement(), and MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetVoronoiTessellation().
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
- Parameters
-
pCellPopulation a pointer to the CaBasedCellPopulation to visit.
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 82 of file VoronoiDataWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
- Parameters
-
pCellPopulation a pointer to the NodeBasedCellPopulation to visit.
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 88 of file VoronoiDataWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
- Parameters
-
pCellPopulation a pointer to the PottsBasedCellPopulation to visit.
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 94 of file VoronoiDataWriter.cpp.
References EXCEPTION.
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virtual |
Visit the population and write the data.
This is an empty dummy function, since this class is defined for use with a MeshBasedCellPopulation only.
- Parameters
-
pCellPopulation a pointer to the VertexBasedCellPopulation to visit.
Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.
Definition at line 100 of file VoronoiDataWriter.cpp.
References EXCEPTION.
Friends And Related Function Documentation
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friend |
Needed for serialization.
Definition at line 53 of file VoronoiDataWriter.hpp.
The documentation for this class was generated from the following files:
- cell_based/src/writers/population_writers/VoronoiDataWriter.hpp
- cell_based/src/writers/population_writers/VoronoiDataWriter.cpp
