Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #include <cassert> 00037 #include "AbstractMeshWriter.hpp" 00038 #include "PetscTools.hpp" 00039 00041 // Implementation 00043 00044 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00045 AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::AbstractMeshWriter(const std::string &rDirectory, 00046 const std::string &rBaseName, 00047 const bool clearOutputDir) 00048 : mBaseName(rBaseName), 00049 mpMeshReader(NULL) 00050 { 00051 mpOutputFileHandler = new OutputFileHandler(rDirectory, clearOutputDir); 00052 } 00053 00054 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00055 AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::~AbstractMeshWriter() 00056 { 00057 delete mpOutputFileHandler; 00058 } 00059 00060 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00061 std::string AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetOutputDirectory() 00062 { 00063 return mpOutputFileHandler->GetOutputDirectoryFullPath(); 00064 } 00065 00066 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00067 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumNodes() 00068 { 00069 return mNumNodes; 00070 } 00071 00072 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00073 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumElements() 00074 { 00075 return mNumElements; 00076 } 00077 00078 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00079 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumBoundaryFaces() 00080 { 00081 return mNumBoundaryElements; 00082 } 00083 00084 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00085 unsigned AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNumCableElements() 00086 { 00087 return mNumCableElements; 00088 } 00089 00090 00091 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00092 std::vector<double> AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextNode() 00093 { 00094 assert(mpMeshReader!=NULL); 00095 return mpMeshReader->GetNextNode(); 00096 } 00097 00098 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00099 ElementData AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextElement() 00100 { 00101 assert(mpMeshReader!=NULL); 00102 return mpMeshReader->GetNextElementData(); 00103 } 00104 00105 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00106 ElementData AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextBoundaryElement() 00107 { 00108 assert(mpMeshReader!=NULL); 00109 return mpMeshReader->GetNextFaceData(); 00110 } 00111 00112 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00113 ElementData AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::GetNextCableElement() 00114 { 00115 assert(mpMeshReader!=NULL); 00116 return mpMeshReader->GetNextCableElementData(); 00117 } 00118 00119 00120 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00121 void AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>::WriteFilesUsingMeshReader( 00122 AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>& rMeshReader) 00123 { 00124 mpMeshReader = &rMeshReader; 00125 mNumNodes = mpMeshReader->GetNumNodes(); 00126 mNumElements = mpMeshReader->GetNumElements(); 00127 mNumBoundaryElements = mpMeshReader->GetNumFaces(); 00128 00130 mNumCableElements = mpMeshReader->GetNumCableElements(); 00131 00132 if (PetscTools::AmMaster()) 00133 { 00134 WriteFiles(); 00135 } 00136 } 00137 00139 // Explicit instantiation 00141 00142 template class AbstractMeshWriter<1,1>; 00143 template class AbstractMeshWriter<1,2>; 00144 template class AbstractMeshWriter<1,3>; 00145 template class AbstractMeshWriter<2,2>; 00146 template class AbstractMeshWriter<2,3>; 00147 template class AbstractMeshWriter<3,3>;