| cell_based/src/common/OdeLinearSystemSolver.cpp [code] | |
| cell_based/src/common/OdeLinearSystemSolver.hpp [code] | |
| cell_based/src/common/SimulationTime.cpp [code] | |
| cell_based/src/common/SimulationTime.hpp [code] | |
| cell_based/src/fortests/AbstractCellBasedTestSuite.hpp [code] | |
| cell_based/src/fortests/CheckReadyToDivideAndPhaseIsUpdated.hpp [code] | |
| cell_based/src/mesh/Cylindrical2dMesh.cpp [code] | |
| cell_based/src/mesh/Cylindrical2dMesh.hpp [code] | |
| cell_based/src/mesh/Cylindrical2dVertexMesh.cpp [code] | |
| cell_based/src/mesh/Cylindrical2dVertexMesh.hpp [code] | |
| cell_based/src/mesh/CylindricalHoneycombMeshGenerator.cpp [code] | |
| cell_based/src/mesh/CylindricalHoneycombMeshGenerator.hpp [code] | |
| cell_based/src/mesh/CylindricalHoneycombVertexMeshGenerator.cpp [code] | |
| cell_based/src/mesh/CylindricalHoneycombVertexMeshGenerator.hpp [code] | |
| cell_based/src/mesh/HoneycombMeshGenerator.cpp [code] | |
| cell_based/src/mesh/HoneycombMeshGenerator.hpp [code] | |
| cell_based/src/mesh/HoneycombVertexMeshGenerator.cpp [code] | |
| cell_based/src/mesh/HoneycombVertexMeshGenerator.hpp [code] | |
| cell_based/src/mesh/NodesOnlyMesh.cpp [code] | |
| cell_based/src/mesh/NodesOnlyMesh.hpp [code] | |
| cell_based/src/mesh/PottsElement.cpp [code] | |
| cell_based/src/mesh/PottsElement.hpp [code] | |
| cell_based/src/mesh/PottsMesh.cpp [code] | |
| cell_based/src/mesh/PottsMesh.hpp [code] | |
| cell_based/src/mesh/PottsMeshGenerator.cpp [code] | |
| cell_based/src/mesh/PottsMeshGenerator.hpp [code] | |
| cell_based/src/mesh/PottsMeshReader.cpp [code] | |
| cell_based/src/mesh/PottsMeshReader.hpp [code] | |
| cell_based/src/mesh/PottsMeshWriter.cpp [code] | |
| cell_based/src/mesh/PottsMeshWriter.hpp [code] | |
| cell_based/src/mesh/SemMesh.cpp [code] | |
| cell_based/src/mesh/SemMesh.hpp [code] | |
| cell_based/src/mesh/SemMeshGenerator.cpp [code] | |
| cell_based/src/mesh/SemMeshGenerator.hpp [code] | |
| cell_based/src/mesh/SemMeshReader.cpp [code] | |
| cell_based/src/mesh/SemMeshReader.hpp [code] | |
| cell_based/src/mesh/SemMeshWriter.cpp [code] | |
| cell_based/src/mesh/SemMeshWriter.hpp [code] | |
| cell_based/src/odes/Alarcon2004OxygenBasedCellCycleOdeSystem.cpp [code] | |
| cell_based/src/odes/Alarcon2004OxygenBasedCellCycleOdeSystem.hpp [code] | |
| cell_based/src/odes/CellwiseOdeSystemInformation.hpp [code] | |
| cell_based/src/odes/DeltaNotchOdeSystem.cpp [code] | |
| cell_based/src/odes/DeltaNotchOdeSystem.hpp [code] | |
| cell_based/src/odes/TysonNovak2001OdeSystem.cpp [code] | |
| cell_based/src/odes/TysonNovak2001OdeSystem.hpp [code] | |
| cell_based/src/population/AbstractCellPopulation.cpp [code] | |
| cell_based/src/population/AbstractCellPopulation.hpp [code] | |
| cell_based/src/population/AbstractCentreBasedCellPopulation.cpp [code] | |
| cell_based/src/population/AbstractCentreBasedCellPopulation.hpp [code] | |
| cell_based/src/population/AbstractOffLatticeCellPopulation.cpp [code] | |
| cell_based/src/population/AbstractOffLatticeCellPopulation.hpp [code] | |
| cell_based/src/population/AbstractOnLatticeCellPopulation.cpp [code] | |
| cell_based/src/population/AbstractOnLatticeCellPopulation.hpp [code] | |
| cell_based/src/population/CellwiseDataGradient.cpp [code] | |
| cell_based/src/population/CellwiseDataGradient.hpp [code] | |
| cell_based/src/population/MeshBasedCellPopulation.cpp [code] | |
| cell_based/src/population/MeshBasedCellPopulation.hpp [code] | |
| cell_based/src/population/MeshBasedCellPopulationWithGhostNodes.cpp [code] | |
| cell_based/src/population/MeshBasedCellPopulationWithGhostNodes.hpp [code] | |
| cell_based/src/population/MultipleCaBasedCellPopulation.cpp [code] | |
| cell_based/src/population/MultipleCaBasedCellPopulation.hpp [code] | |
| cell_based/src/population/NodeBasedCellPopulation.cpp [code] | |
| cell_based/src/population/NodeBasedCellPopulation.hpp [code] | |
| cell_based/src/population/NodeBasedCellPopulationWithBuskeUpdate.cpp [code] | |
| cell_based/src/population/NodeBasedCellPopulationWithBuskeUpdate.hpp [code] | |
| cell_based/src/population/NodeBasedCellPopulationWithParticles.cpp [code] | |
| cell_based/src/population/NodeBasedCellPopulationWithParticles.hpp [code] | |
| cell_based/src/population/PottsBasedCellPopulation.cpp [code] | |
| cell_based/src/population/PottsBasedCellPopulation.hpp [code] | |
| cell_based/src/population/VertexBasedCellPopulation.cpp [code] | |
| cell_based/src/population/VertexBasedCellPopulation.hpp [code] | |
| cell_based/src/population/boundary_conditions/AbstractCellPopulationBoundaryCondition.cpp [code] | |
| cell_based/src/population/boundary_conditions/AbstractCellPopulationBoundaryCondition.hpp [code] | |
| cell_based/src/population/boundary_conditions/PlaneBoundaryCondition.cpp [code] | |
| cell_based/src/population/boundary_conditions/PlaneBoundaryCondition.hpp [code] | |
| cell_based/src/population/boundary_conditions/SphereGeometryBoundaryCondition.cpp [code] | |
| cell_based/src/population/boundary_conditions/SphereGeometryBoundaryCondition.hpp [code] | |
| cell_based/src/population/cell/Cell.cpp [code] | |
| cell_based/src/population/cell/Cell.hpp [code] | |
| cell_based/src/population/cell/CellProliferativeTypes.hpp [code] | |
| cell_based/src/population/cell/CellsGenerator.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModelOdeSolver.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractCellCycleModelOdeSolver.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractOdeBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractOdeBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/Alarcon2004OxygenBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/Alarcon2004OxygenBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeHandler.cpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeHandler.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeSolver.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCycleModelOdeSolverExportWrapper.hpp [code] | |
| cell_based/src/population/cell/cycle/CellCyclePhases.hpp [code] | |
| cell_based/src/population/cell/cycle/ContactInhibitionCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/ContactInhibitionCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/DeltaNotchCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/DeltaNotchCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/FixedDurationGenerationBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/FixedDurationGenerationBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/SimpleOxygenBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/SimpleOxygenBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/StochasticDurationCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/StochasticDurationCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/StochasticOxygenBasedCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/StochasticOxygenBasedCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/cycle/TysonNovakCellCycleModel.cpp [code] | |
| cell_based/src/population/cell/cycle/TysonNovakCellCycleModel.hpp [code] | |
| cell_based/src/population/cell/mutations/AbstractCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/AbstractCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/ApcOneHitCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/ApcOneHitCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/ApcTwoHitCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/ApcTwoHitCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/BetaCateninOneHitCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/BetaCateninOneHitCellMutationState.hpp [code] | |
| cell_based/src/population/cell/mutations/WildTypeCellMutationState.cpp [code] | |
| cell_based/src/population/cell/mutations/WildTypeCellMutationState.hpp [code] | |
| cell_based/src/population/cell/properties/AbstractCellProliferativeType.cpp [code] | |
| cell_based/src/population/cell/properties/AbstractCellProliferativeType.hpp [code] | |
| cell_based/src/population/cell/properties/AbstractCellProperty.cpp [code] | |
| cell_based/src/population/cell/properties/AbstractCellProperty.hpp [code] | |
| cell_based/src/population/cell/properties/ApoptoticCellProperty.cpp [code] | |
| cell_based/src/population/cell/properties/ApoptoticCellProperty.hpp [code] | |
| cell_based/src/population/cell/properties/CellAncestor.cpp [code] | |
| cell_based/src/population/cell/properties/CellAncestor.hpp [code] | |
| cell_based/src/population/cell/properties/CellData.cpp [code] | |
| cell_based/src/population/cell/properties/CellData.hpp [code] | |
| cell_based/src/population/cell/properties/CellId.cpp [code] | |
| cell_based/src/population/cell/properties/CellId.hpp [code] | |
| cell_based/src/population/cell/properties/CellLabel.cpp [code] | |
| cell_based/src/population/cell/properties/CellLabel.hpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyCollection.cpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyCollection.hpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyRegistry.cpp [code] | |
| cell_based/src/population/cell/properties/CellPropertyRegistry.hpp [code] | |
| cell_based/src/population/cell/properties/DifferentiatedCellProliferativeType.cpp [code] | |
| cell_based/src/population/cell/properties/DifferentiatedCellProliferativeType.hpp [code] | |
| cell_based/src/population/cell/properties/StemCellProliferativeType.cpp [code] | |
| cell_based/src/population/cell/properties/StemCellProliferativeType.hpp [code] | |
| cell_based/src/population/cell/properties/TransitCellProliferativeType.cpp [code] | |
| cell_based/src/population/cell/properties/TransitCellProliferativeType.hpp [code] | |
| cell_based/src/population/killers/AbstractCellKiller.cpp [code] | |
| cell_based/src/population/killers/AbstractCellKiller.hpp [code] | |
| cell_based/src/population/killers/ApoptoticCellKiller.cpp [code] | |
| cell_based/src/population/killers/ApoptoticCellKiller.hpp [code] | |
| cell_based/src/population/killers/PlaneBasedCellKiller.cpp [code] | |
| cell_based/src/population/killers/PlaneBasedCellKiller.hpp [code] | |
| cell_based/src/population/killers/RandomCellKiller.cpp [code] | |
| cell_based/src/population/killers/RandomCellKiller.hpp [code] | |
| cell_based/src/population/killers/TargetedCellKiller.cpp [code] | |
| cell_based/src/population/killers/TargetedCellKiller.hpp [code] | |
| cell_based/src/population/mechanics/AbstractForce.cpp [code] | |
| cell_based/src/population/mechanics/AbstractForce.hpp [code] | |
| cell_based/src/population/mechanics/AbstractTwoBodyInteractionForce.cpp [code] | |
| cell_based/src/population/mechanics/AbstractTwoBodyInteractionForce.hpp [code] | |
| cell_based/src/population/mechanics/BuskeAdhesiveForce.cpp [code] | |
| cell_based/src/population/mechanics/BuskeAdhesiveForce.hpp [code] | |
| cell_based/src/population/mechanics/BuskeCompressionForce.cpp [code] | |
| cell_based/src/population/mechanics/BuskeCompressionForce.hpp [code] | |
| cell_based/src/population/mechanics/BuskeElasticForce.cpp [code] | |
| cell_based/src/population/mechanics/BuskeElasticForce.hpp [code] | |
| cell_based/src/population/mechanics/ChemotacticForce.cpp [code] | |
| cell_based/src/population/mechanics/ChemotacticForce.hpp [code] | |
| cell_based/src/population/mechanics/DiffusionForce.cpp [code] | |
| cell_based/src/population/mechanics/DiffusionForce.hpp [code] | |
| cell_based/src/population/mechanics/DiscreteSystemForceCalculator.cpp [code] | |
| cell_based/src/population/mechanics/DiscreteSystemForceCalculator.hpp [code] | |
| cell_based/src/population/mechanics/GeneralisedLinearSpringForce.cpp [code] | |
| cell_based/src/population/mechanics/GeneralisedLinearSpringForce.hpp [code] | |
| cell_based/src/population/mechanics/NagaiHondaDifferentialAdhesionForce.cpp [code] | |
| cell_based/src/population/mechanics/NagaiHondaDifferentialAdhesionForce.hpp [code] | |
| cell_based/src/population/mechanics/NagaiHondaForce.cpp [code] | |
| cell_based/src/population/mechanics/NagaiHondaForce.hpp [code] | |
| cell_based/src/population/mechanics/RepulsionForce.cpp [code] | |
| cell_based/src/population/mechanics/RepulsionForce.hpp [code] | |
| cell_based/src/population/mechanics/WelikyOsterForce.cpp [code] | |
| cell_based/src/population/mechanics/WelikyOsterForce.hpp [code] | |
| cell_based/src/population/pdes/AveragedSourcePde.cpp [code] | |
| cell_based/src/population/pdes/AveragedSourcePde.hpp [code] | |
| cell_based/src/population/pdes/CellBasedPdeHandler.cpp [code] | |
| cell_based/src/population/pdes/CellBasedPdeHandler.hpp [code] | |
| cell_based/src/population/pdes/CellBasedPdeSolver.cpp [code] | |
| cell_based/src/population/pdes/CellBasedPdeSolver.hpp [code] | |
| cell_based/src/population/pdes/CellwiseSourcePde.cpp [code] | |
| cell_based/src/population/pdes/CellwiseSourcePde.hpp [code] | |
| cell_based/src/population/pdes/PdeAndBoundaryConditions.cpp [code] | |
| cell_based/src/population/pdes/PdeAndBoundaryConditions.hpp [code] | |
| cell_based/src/population/pdes/SimpleUniformSourcePde.cpp [code] | |
| cell_based/src/population/pdes/SimpleUniformSourcePde.hpp [code] | |
| cell_based/src/population/pdes/VolumeDependentAveragedSourcePde.cpp [code] | |
| cell_based/src/population/pdes/VolumeDependentAveragedSourcePde.hpp [code] | |
| cell_based/src/population/update_rules/AbstractMultipleCaUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/AbstractMultipleCaUpdateRule.hpp [code] | |
| cell_based/src/population/update_rules/AbstractPottsUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/AbstractPottsUpdateRule.hpp [code] | |
| cell_based/src/population/update_rules/AdhesionPottsUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/AdhesionPottsUpdateRule.hpp [code] | |
| cell_based/src/population/update_rules/ChemotaxisPottsUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/ChemotaxisPottsUpdateRule.hpp [code] | |
| cell_based/src/population/update_rules/DifferentialAdhesionPottsUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/DifferentialAdhesionPottsUpdateRule.hpp [code] | |
| cell_based/src/population/update_rules/DiffusionMultipleCaUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/DiffusionMultipleCaUpdateRule.hpp [code] | |
| cell_based/src/population/update_rules/SurfaceAreaConstraintPottsUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/SurfaceAreaConstraintPottsUpdateRule.hpp [code] | |
| cell_based/src/population/update_rules/VolumeConstraintPottsUpdateRule.cpp [code] | |
| cell_based/src/population/update_rules/VolumeConstraintPottsUpdateRule.hpp [code] | |
| cell_based/src/simulation/AbstractCellBasedSimulation.cpp [code] | |
| cell_based/src/simulation/AbstractCellBasedSimulation.hpp [code] | |
| cell_based/src/simulation/CellBasedSimulationArchiver.hpp [code] | |
| cell_based/src/simulation/DeltaNotchOffLatticeSimulation.cpp [code] | |
| cell_based/src/simulation/DeltaNotchOffLatticeSimulation.hpp [code] | |
| cell_based/src/simulation/OffLatticeSimulation.cpp [code] | |
| cell_based/src/simulation/OffLatticeSimulation.hpp [code] | |
| cell_based/src/simulation/OnLatticeSimulation.cpp [code] | |
| cell_based/src/simulation/OnLatticeSimulation.hpp [code] | |
| cell_based/src/simulation/VolumeTrackedOffLatticeSimulation.cpp [code] | |
| cell_based/src/simulation/VolumeTrackedOffLatticeSimulation.hpp [code] | |
| continuum_mechanics/src/common/NonlinearElasticityTools.cpp [code] | |
| continuum_mechanics/src/common/NonlinearElasticityTools.hpp [code] | |
| continuum_mechanics/src/problem/CompressibilityType.hpp [code] | |
| continuum_mechanics/src/problem/ContinuumMechanicsProblemDefinition.cpp [code] | |
| continuum_mechanics/src/problem/ContinuumMechanicsProblemDefinition.hpp [code] | |
| continuum_mechanics/src/problem/SolidMechanicsProblemDefinition.cpp [code] | |
| continuum_mechanics/src/problem/SolidMechanicsProblemDefinition.hpp [code] | |
| continuum_mechanics/src/problem/StokesFlowProblemDefinition.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractCompressibleMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractIncompressibleMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractIsotropicCompressibleMaterialLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractIsotropicCompressibleMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractIsotropicIncompressibleMaterialLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractIsotropicIncompressibleMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractMaterialLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/AbstractMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/CompressibleExponentialLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/CompressibleExponentialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/CompressibleMooneyRivlinMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/ExponentialMaterialLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/ExponentialMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/MooneyRivlinMaterialLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/MooneyRivlinMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/NashHunterPoleZeroLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/NashHunterPoleZeroLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/PoleZeroMaterialLaw.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/PoleZeroMaterialLaw.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/PolynomialMaterialLaw3d.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/PolynomialMaterialLaw3d.hpp [code] | |
| continuum_mechanics/src/problem/material_laws/SchmidCostaExponentialLaw2d.cpp [code] | |
| continuum_mechanics/src/problem/material_laws/SchmidCostaExponentialLaw2d.hpp [code] | |
| continuum_mechanics/src/solver/AbstractContinuumMechanicsAssembler.hpp [code] | |
| continuum_mechanics/src/solver/AbstractContinuumMechanicsSolver.hpp [code] | |
| continuum_mechanics/src/solver/AbstractNonlinearElasticitySolver.hpp [code] | |
| continuum_mechanics/src/solver/CompressibleNonlinearElasticitySolver.cpp [code] | |
| continuum_mechanics/src/solver/CompressibleNonlinearElasticitySolver.hpp [code] | |
| continuum_mechanics/src/solver/ContinuumMechanicsNeumannBcsAssembler.hpp [code] | |
| continuum_mechanics/src/solver/IncompressibleNonlinearElasticitySolver.cpp [code] | |
| continuum_mechanics/src/solver/IncompressibleNonlinearElasticitySolver.hpp [code] | |
| continuum_mechanics/src/solver/StokesFlowAssembler.hpp [code] | |
| continuum_mechanics/src/solver/StokesFlowPreconditionerAssembler.hpp [code] | |
| continuum_mechanics/src/solver/StokesFlowSolver.hpp [code] | |
| crypt/src/boundary_conditions/CryptSimulationBoundaryCondition.cpp [code] | |
| crypt/src/boundary_conditions/CryptSimulationBoundaryCondition.hpp [code] | |
| crypt/src/cell/CryptCellsGenerator.hpp [code] | |
| crypt/src/cell/cycle/AbstractVanLeeuwen2009WntSwatCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/AbstractVanLeeuwen2009WntSwatCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/AbstractWntOdeBasedCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/AbstractWntOdeBasedCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/SimpleWntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/SimpleWntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/SingleOdeWntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/SingleOdeWntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/StochasticWntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/StochasticWntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp [code] | |
| crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp [code] | |
| crypt/src/cell/cycle/WntCellCycleModel.cpp [code] | |
| crypt/src/cell/cycle/WntCellCycleModel.hpp [code] | |
| crypt/src/cell/cycle/WntConcentration.cpp [code] | |
| crypt/src/cell/cycle/WntConcentration.hpp [code] | |
| crypt/src/killers/RadialSloughingCellKiller.cpp [code] | |
| crypt/src/killers/RadialSloughingCellKiller.hpp [code] | |
| crypt/src/killers/SloughingCellKiller.cpp [code] | |
| crypt/src/killers/SloughingCellKiller.hpp [code] | |
| crypt/src/mechanics/CryptProjectionForce.cpp [code] | |
| crypt/src/mechanics/CryptProjectionForce.hpp [code] | |
| crypt/src/mechanics/LinearSpringWithVariableSpringConstantsForce.cpp [code] | |
| crypt/src/mechanics/LinearSpringWithVariableSpringConstantsForce.hpp [code] | |
| crypt/src/mechanics/VertexCryptBoundaryForce.cpp [code] | |
| crypt/src/mechanics/VertexCryptBoundaryForce.hpp [code] | |
| crypt/src/odes/Mirams2010WntOdeSystem.cpp [code] | |
| crypt/src/odes/Mirams2010WntOdeSystem.hpp [code] | |
| crypt/src/odes/VanLeeuwen2009WntSwatCellCycleOdeSystem.cpp [code] | |
| crypt/src/odes/VanLeeuwen2009WntSwatCellCycleOdeSystem.hpp [code] | |
| crypt/src/odes/WntCellCycleOdeSystem.cpp [code] | |
| crypt/src/odes/WntCellCycleOdeSystem.hpp [code] | |
| crypt/src/simulation/CryptSimulation1d.cpp [code] | |
| crypt/src/simulation/CryptSimulation1d.hpp [code] | |
| crypt/src/simulation/CryptSimulation2d.cpp [code] | |
| crypt/src/simulation/CryptSimulation2d.hpp [code] | |
| crypt/src/statistics/AbstractCryptStatistics.cpp [code] | |
| crypt/src/statistics/AbstractCryptStatistics.hpp [code] | |
| crypt/src/statistics/CryptProjectionStatistics.cpp [code] | |
| crypt/src/statistics/CryptProjectionStatistics.hpp [code] | |
| crypt/src/statistics/CryptStatistics.cpp [code] | |
| crypt/src/statistics/CryptStatistics.hpp [code] | |
| global/src/BoostFilesystem.hpp [code] | |
| global/src/ChasteBuildRoot.hpp [code] | |
| global/src/CommandLineArguments.cpp [code] | |
| global/src/CommandLineArguments.hpp [code] | |
| global/src/Debug.cpp [code] | |
| global/src/Debug.hpp [code] | |
| global/src/DoxygenMainPage.hpp [code] | |
| global/src/Exception.cpp [code] | |
| global/src/Exception.hpp [code] | |
| global/src/ExecutableSupport.cpp [code] | |
| global/src/ExecutableSupport.hpp [code] | |
| global/src/FileFinder.cpp [code] | |
| global/src/FileFinder.hpp [code] | |
| global/src/GetCurrentWorkingDirectory.cpp [code] | |
| global/src/GetCurrentWorkingDirectory.hpp [code] | |
| global/src/IsNan.hpp [code] | |
| global/src/LogFile.cpp [code] | |
| global/src/LogFile.hpp [code] | |
| global/src/MathsCustomFunctions.cpp [code] | |
| global/src/MathsCustomFunctions.hpp [code] | |
| global/src/ObjectCommunicator.hpp [code] | |
| global/src/OutputDirectoryFifoQueue.cpp [code] | |
| global/src/OutputDirectoryFifoQueue.hpp [code] | |
| global/src/OutputFileHandler.cpp [code] | |
| global/src/OutputFileHandler.hpp [code] | |
| global/src/ProgressReporter.cpp [code] | |
| global/src/ProgressReporter.hpp [code] | |
| global/src/RandomNumberGenerator.cpp [code] | |
| global/src/RandomNumberGenerator.hpp [code] | |
| global/src/SmartPointers.hpp [code] | |
| global/src/TimeStepper.cpp [code] | |
| global/src/TimeStepper.hpp [code] | |
| global/src/VectorHelperFunctions.hpp [code] | |
| global/src/Version.hpp [code] | |
| global/src/Warnings.cpp [code] | |
| global/src/Warnings.hpp [code] | |
| global/src/checkpointing/ArchiveLocationInfo.cpp [code] | |
| global/src/checkpointing/ArchiveLocationInfo.hpp [code] | |
| global/src/checkpointing/ArchiveOpener.cpp [code] | |
| global/src/checkpointing/ArchiveOpener.hpp [code] | |
| global/src/checkpointing/ChasteSerialization.hpp [code] | |
| global/src/checkpointing/ChasteSerializationVersion.hpp [code] | |
| global/src/checkpointing/CheckpointArchiveTypes.hpp [code] | |
| global/src/checkpointing/CheckpointArchiveTypesIfNeeded.hpp [code] | |
| global/src/checkpointing/ClassIsAbstract.hpp [code] | |
| global/src/checkpointing/Identifiable.cpp [code] | |
| global/src/checkpointing/Identifiable.hpp [code] | |
| global/src/checkpointing/ProcessSpecificArchive.cpp [code] | |
| global/src/checkpointing/ProcessSpecificArchive.hpp [code] | |
| global/src/checkpointing/SerializableSingleton.hpp [code] | |
| global/src/checkpointing/SerializationExportWrapper.hpp [code] | |
| global/src/checkpointing/SerializationExportWrapperForCpp.hpp [code] | |
| global/src/fortests/AbstractFileComparison.hpp [code] | |
| global/src/fortests/FileComparison.hpp [code] | |
| global/src/fortests/NumericFileComparison.hpp [code] | |
| global/src/fortests/PetscSetupAndFinalize.hpp [code] | |
| global/src/parallel/DistributedVector.cpp [code] | |
| global/src/parallel/DistributedVector.hpp [code] | |
| global/src/parallel/DistributedVectorException.cpp [code] | |
| global/src/parallel/DistributedVectorException.hpp [code] | |
| global/src/parallel/DistributedVectorFactory.cpp [code] | |
| global/src/parallel/DistributedVectorFactory.hpp [code] | |
| global/src/parallel/PetscException.cpp [code] | |
| global/src/parallel/PetscException.hpp [code] | |
| global/src/parallel/PetscTools.cpp [code] | |
| global/src/parallel/PetscTools.hpp [code] | |
| global/src/parallel/ReplicatableVector.cpp [code] | |
| global/src/parallel/ReplicatableVector.hpp [code] | |
| global/src/timing/CellBasedEventHandler.cpp [code] | |
| global/src/timing/CellBasedEventHandler.hpp [code] | |
| global/src/timing/GenericEventHandler.hpp [code] | |
| global/src/timing/HeartEventHandler.cpp [code] | |
| global/src/timing/HeartEventHandler.hpp [code] | |
| global/src/timing/MechanicsEventHandler.cpp [code] | |
| global/src/timing/MechanicsEventHandler.hpp [code] | |
| global/src/timing/Timer.cpp [code] | |
| global/src/timing/Timer.hpp [code] | |
| heart/src/convergence/AbstractConvergenceTester.cpp [code] | |
| heart/src/convergence/AbstractConvergenceTester.hpp [code] | |
| heart/src/convergence/OdeConvergenceTester.hpp [code] | |
| heart/src/convergence/OdePdeConvergenceTester.hpp [code] | |
| heart/src/convergence/PdeConvergenceTester.hpp [code] | |
| heart/src/convergence/SpaceConvergenceTester.hpp [code] | |
| heart/src/fortests/CheckMonoLr91Vars.hpp [code] | |
| heart/src/fortests/RunAndCheckIonicModels.hpp [code] | |
| heart/src/fortests/SimpleBathProblemSetup.hpp [code] | |
| heart/src/io/FibreReader.cpp [code] | |
| heart/src/io/FibreReader.hpp [code] | |
| heart/src/io/FibreWriter.cpp [code] | |
| heart/src/io/FibreWriter.hpp [code] | |
| heart/src/io/HeartFileFinder.cpp [code] | |
| heart/src/io/HeartFileFinder.hpp [code] | |
| heart/src/io/XmlTools.cpp [code] | |
| heart/src/io/XmlTools.hpp [code] | |
| heart/src/odes/AbstractBackwardEulerCardiacCell.hpp [code] | |
| heart/src/odes/AbstractCardiacCell.cpp [code] | |
| heart/src/odes/AbstractCardiacCell.hpp [code] | |
| heart/src/odes/AbstractCardiacCellInterface.cpp [code] | |
| heart/src/odes/AbstractCardiacCellInterface.hpp [code] | |
| heart/src/odes/AbstractCardiacCellWithModifiers.cpp [code] | |
| heart/src/odes/AbstractCardiacCellWithModifiers.hpp [code] | |
| heart/src/odes/AbstractCvodeCell.cpp [code] | |
| heart/src/odes/AbstractCvodeCell.hpp [code] | |
| heart/src/odes/AbstractDynamicallyLoadableEntity.cpp [code] | |
| heart/src/odes/AbstractDynamicallyLoadableEntity.hpp [code] | |
| heart/src/odes/AbstractLookupTableCollection.cpp [code] | |
| heart/src/odes/AbstractLookupTableCollection.hpp [code] | |
| heart/src/odes/AbstractModifier.hpp [code] | |
| heart/src/odes/AbstractRushLarsenCardiacCell.cpp [code] | |
| heart/src/odes/AbstractRushLarsenCardiacCell.hpp [code] | |
| heart/src/odes/CardiacNewtonSolver.hpp [code] | |
| heart/src/odes/CellMLLoader.cpp [code] | |
| heart/src/odes/CellMLLoader.hpp [code] | |
| heart/src/odes/CellMLToSharedLibraryConverter.cpp [code] | |
| heart/src/odes/CellMLToSharedLibraryConverter.hpp [code] | |
| heart/src/odes/DynamicCellModelLoader.cpp [code] | |
| heart/src/odes/DynamicCellModelLoader.hpp [code] | |
| heart/src/odes/DynamicModelLoaderRegistry.cpp [code] | |
| heart/src/odes/DynamicModelLoaderRegistry.hpp [code] | |
| heart/src/odes/Modifiers.hpp [code] | |
| heart/src/odes/contractionmodels/AbstractAlgebraicContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/AbstractContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/AbstractOdeBasedContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/ContractionModelName.hpp [code] | |
| heart/src/odes/contractionmodels/FakeBathContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/FakeBathContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/Kerchoffs2003ContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/Kerchoffs2003ContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/Nash2004ContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/Nash2004ContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/NhsContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/NhsContractionModel.hpp [code] | |
| heart/src/odes/contractionmodels/NhsModelWithBackwardSolver.cpp [code] | |
| heart/src/odes/contractionmodels/NhsModelWithBackwardSolver.hpp [code] | |
| heart/src/odes/contractionmodels/NonPhysiologicalContractionModel.cpp [code] | |
| heart/src/odes/contractionmodels/NonPhysiologicalContractionModel.hpp [code] | |
| heart/src/odes/ionicmodels/FakeBathCell.cpp [code] | |
| heart/src/odes/ionicmodels/FakeBathCell.hpp [code] | |
| heart/src/odes/ionicmodels/FitzHughNagumo1961OdeSystem.cpp [code] | |
| heart/src/odes/ionicmodels/FitzHughNagumo1961OdeSystem.hpp [code] | |
| heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.cpp [code] | |
| heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.hpp [code] | |
| heart/src/odes/ionicmodels/noncardiac/CorriasBuistICCModified.cpp [code] | |
| heart/src/odes/ionicmodels/noncardiac/CorriasBuistICCModified.hpp [code] | |
| heart/src/odes/ionicmodels/noncardiac/CorriasBuistSMCModified.cpp [code] | |
| heart/src/odes/ionicmodels/noncardiac/CorriasBuistSMCModified.hpp [code] | |
| heart/src/odes/single_cell/AbstractSteadyStateRunner.cpp [code] | |
| heart/src/odes/single_cell/AbstractSteadyStateRunner.hpp [code] | |
| heart/src/odes/single_cell/SteadyStateRunner.cpp [code] | |
| heart/src/odes/single_cell/SteadyStateRunner.hpp [code] | |
| heart/src/postprocessing/CellProperties.cpp [code] | |
| heart/src/postprocessing/CellProperties.hpp [code] | |
| heart/src/postprocessing/Hdf5ToCmguiConverter.cpp [code] | |
| heart/src/postprocessing/Hdf5ToCmguiConverter.hpp [code] | |
| heart/src/postprocessing/Hdf5ToMeshalyzerConverter.cpp [code] | |
| heart/src/postprocessing/Hdf5ToMeshalyzerConverter.hpp [code] | |
| heart/src/postprocessing/PostProcessingWriter.cpp [code] | |
| heart/src/postprocessing/PostProcessingWriter.hpp [code] | |
| heart/src/postprocessing/PropagationPropertiesCalculator.cpp [code] | |
| heart/src/postprocessing/PropagationPropertiesCalculator.hpp [code] | |
| heart/src/postprocessing/PseudoEcgCalculator.cpp [code] | |
| heart/src/postprocessing/PseudoEcgCalculator.hpp [code] | |
| heart/src/postprocessing/VoltageInterpolaterOntoMechanicsMesh.cpp [code] | |
| heart/src/postprocessing/VoltageInterpolaterOntoMechanicsMesh.hpp [code] | |
| heart/src/problem/AbstractCardiacProblem.cpp [code] | |
| heart/src/problem/AbstractCardiacProblem.hpp [code] | |
| heart/src/problem/BidomainProblem.cpp [code] | |
| heart/src/problem/BidomainProblem.hpp [code] | |
| heart/src/problem/BidomainWithBathProblem.cpp [code] | |
| heart/src/problem/BidomainWithBathProblem.hpp [code] | |
| heart/src/problem/CardiacElectroMechanicsProblem.cpp [code] | |
| heart/src/problem/CardiacElectroMechanicsProblem.hpp [code] | |
| heart/src/problem/CardiacElectroMechProbRegularGeom.hpp [code] | |
| heart/src/problem/CardiacSimulation.cpp [code] | |
| heart/src/problem/CardiacSimulation.hpp [code] | |
| heart/src/problem/CardiacSimulationArchiver.cpp [code] | |
| heart/src/problem/CardiacSimulationArchiver.hpp [code] | |
| heart/src/problem/Electrodes.cpp [code] | |
| heart/src/problem/Electrodes.hpp [code] | |
| heart/src/problem/ElectroMechanicsProblemDefinition.cpp [code] | |
| heart/src/problem/ElectroMechanicsProblemDefinition.hpp [code] | |
| heart/src/problem/ExtendedBidomainProblem.cpp [code] | |
| heart/src/problem/ExtendedBidomainProblem.hpp [code] | |
| heart/src/problem/HeartConfig.cpp [code] | |
| heart/src/problem/HeartConfig.hpp [code] | |
| heart/src/problem/HeartConfigDefaults.hpp [code] | |
| heart/src/problem/HeartGeometryInformation.cpp [code] | |
| heart/src/problem/HeartGeometryInformation.hpp [code] | |
| heart/src/problem/HeartRegionCodes.cpp [code] | |
| heart/src/problem/HeartRegionCodes.hpp [code] | |
| heart/src/problem/MonodomainProblem.cpp [code] | |
| heart/src/problem/MonodomainProblem.hpp [code] | |
| heart/src/problem/PapillaryFibreCalculator.hpp [code] | |
| heart/src/problem/StreeterFibreGenerator.cpp [code] | |
| heart/src/problem/StreeterFibreGenerator.hpp [code] | |
| heart/src/problem/adaptivity/AdaptiveBidomainProblem.cpp [code] | |
| heart/src/problem/adaptivity/AdaptiveBidomainProblem.hpp [code] | |
| heart/src/problem/adaptivity/AdaptiveTetrahedralMesh.cpp [code] | |
| heart/src/problem/adaptivity/AdaptiveTetrahedralMesh.hpp [code] | |
| heart/src/problem/cell_factories/AbstractCardiacCellFactory.cpp [code] | |
| heart/src/problem/cell_factories/AbstractCardiacCellFactory.hpp [code] | |
| heart/src/problem/cell_factories/AbstractPurkinjeCellFactory.cpp [code] | |
| heart/src/problem/cell_factories/AbstractPurkinjeCellFactory.hpp [code] | |
| heart/src/problem/cell_factories/GeneralPlaneStimulusCellFactory.hpp [code] | |
| heart/src/problem/cell_factories/HeartConfigRelatedCellFactory.cpp [code] | |
| heart/src/problem/cell_factories/HeartConfigRelatedCellFactory.hpp [code] | |
| heart/src/problem/cell_factories/PlaneStimulusCellFactory.hpp [code] | |
| heart/src/problem/cell_factories/ZeroStimulusCellFactory.hpp [code] | |
| heart/src/problem/conductivity_tensors/AbstractConductivityTensors.cpp [code] | |
| heart/src/problem/conductivity_tensors/AbstractConductivityTensors.hpp [code] | |
| heart/src/problem/conductivity_tensors/AxisymmetricConductivityTensors.cpp [code] | |
| heart/src/problem/conductivity_tensors/AxisymmetricConductivityTensors.hpp [code] | |
| heart/src/problem/conductivity_tensors/OrthotropicConductivityTensors.cpp [code] | |
| heart/src/problem/conductivity_tensors/OrthotropicConductivityTensors.hpp [code] | |
| heart/src/solver/electrics/AbstractCardiacFeVolumeIntegralAssembler.hpp [code] | |
| heart/src/solver/electrics/AbstractCorrectionTermAssembler.cpp [code] | |
| heart/src/solver/electrics/AbstractCorrectionTermAssembler.hpp [code] | |
| heart/src/solver/electrics/bidomain/AbstractBidomainSolver.cpp [code] | |
| heart/src/solver/electrics/bidomain/AbstractBidomainSolver.hpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainAssembler.cpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainAssembler.hpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainCorrectionTermAssembler.cpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainCorrectionTermAssembler.hpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainMassMatrixAssembler.cpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainMassMatrixAssembler.hpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainNeumannSurfaceTermAssembler.hpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainSolver.cpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainSolver.hpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainWithBathAssembler.cpp [code] | |
| heart/src/solver/electrics/bidomain/BidomainWithBathAssembler.hpp [code] | |
| heart/src/solver/electrics/extended_bidomain/AbstractExtendedBidomainSolver.cpp [code] | |
| heart/src/solver/electrics/extended_bidomain/AbstractExtendedBidomainSolver.hpp [code] | |
| heart/src/solver/electrics/extended_bidomain/ExtendedBidomainAssembler.cpp [code] | |
| heart/src/solver/electrics/extended_bidomain/ExtendedBidomainAssembler.hpp [code] | |
| heart/src/solver/electrics/extended_bidomain/ExtendedBidomainMassMatrixAssembler.cpp [code] | |
| heart/src/solver/electrics/extended_bidomain/ExtendedBidomainMassMatrixAssembler.hpp [code] | |
| heart/src/solver/electrics/extended_bidomain/ExtendedBidomainNeumannSurfaceTermAssembler.hpp [code] | |
| heart/src/solver/electrics/extended_bidomain/ExtendedBidomainSolver.cpp [code] | |
| heart/src/solver/electrics/extended_bidomain/ExtendedBidomainSolver.hpp [code] | |
| heart/src/solver/electrics/monodomain/MonodomainAssembler.cpp [code] | |
| heart/src/solver/electrics/monodomain/MonodomainAssembler.hpp [code] | |
| heart/src/solver/electrics/monodomain/MonodomainCorrectionTermAssembler.cpp [code] | |
| heart/src/solver/electrics/monodomain/MonodomainCorrectionTermAssembler.hpp [code] | |
| heart/src/solver/electrics/monodomain/MonodomainSolver.cpp [code] | |
| heart/src/solver/electrics/monodomain/MonodomainSolver.hpp [code] | |
| heart/src/solver/electrics/monodomain/MonodomainStiffnessMatrixAssembler.hpp [code] | |
| heart/src/solver/electrics/monodomain/OperatorSplittingMonodomainSolver.cpp [code] | |
| heart/src/solver/electrics/monodomain/OperatorSplittingMonodomainSolver.hpp [code] | |
| heart/src/solver/mechanics/AbstractCardiacMechanicsSolver.hpp [code] | |
| heart/src/solver/mechanics/AbstractCardiacMechanicsSolverInterface.hpp [code] | |
| heart/src/solver/mechanics/ExplicitCardiacMechanicsSolver.cpp [code] | |
| heart/src/solver/mechanics/ExplicitCardiacMechanicsSolver.hpp [code] | |
| heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.cpp [code] | |
| heart/src/solver/mechanics/ImplicitCardiacMechanicsSolver.hpp [code] | |
| heart/src/stimulus/AbstractStimulusFunction.cpp [code] | |
| heart/src/stimulus/AbstractStimulusFunction.hpp [code] | |
| heart/src/stimulus/DynamicRestitutionStimulus.cpp [code] | |
| heart/src/stimulus/DynamicRestitutionStimulus.hpp [code] | |
| heart/src/stimulus/MultiStimulus.cpp [code] | |
| heart/src/stimulus/MultiStimulus.hpp [code] | |
| heart/src/stimulus/PurkinjeVentricularJunctionStimulus.cpp [code] | |
| heart/src/stimulus/PurkinjeVentricularJunctionStimulus.hpp [code] | |
| heart/src/stimulus/RegularStimulus.cpp [code] | |
| heart/src/stimulus/RegularStimulus.hpp [code] | |
| heart/src/stimulus/RegularStimulusZeroNetCharge.cpp [code] | |
| heart/src/stimulus/RegularStimulusZeroNetCharge.hpp [code] | |
| heart/src/stimulus/S1S2Stimulus.cpp [code] | |
| heart/src/stimulus/S1S2Stimulus.hpp [code] | |
| heart/src/stimulus/SimpleStimulus.cpp [code] | |
| heart/src/stimulus/SimpleStimulus.hpp [code] | |
| heart/src/stimulus/StimulusBoundaryCondition.cpp [code] | |
| heart/src/stimulus/StimulusBoundaryCondition.hpp [code] | |
| heart/src/stimulus/ZeroStimulus.cpp [code] | |
| heart/src/stimulus/ZeroStimulus.hpp [code] | |
| heart/src/stimulus/tissue_electrodes/AbstractStimulusFactory.cpp [code] | |
| heart/src/stimulus/tissue_electrodes/AbstractStimulusFactory.hpp [code] | |
| heart/src/stimulus/tissue_electrodes/ElectrodesStimulusFactory.cpp [code] | |
| heart/src/stimulus/tissue_electrodes/ElectrodesStimulusFactory.hpp [code] | |
| heart/src/stimulus/tissue_electrodes/ZeroNetChargeElectrodes.cpp [code] | |
| heart/src/stimulus/tissue_electrodes/ZeroNetChargeElectrodes.hpp [code] | |
| heart/src/tissue/AbstractCardiacTissue.cpp [code] | |
| heart/src/tissue/AbstractCardiacTissue.hpp [code] | |
| heart/src/tissue/AbstractConductivityModifier.hpp [code] | |
| heart/src/tissue/BidomainTissue.cpp [code] | |
| heart/src/tissue/BidomainTissue.hpp [code] | |
| heart/src/tissue/ExtendedBidomainTissue.cpp [code] | |
| heart/src/tissue/ExtendedBidomainTissue.hpp [code] | |
| heart/src/tissue/MonodomainTissue.cpp [code] | |
| heart/src/tissue/MonodomainTissue.hpp [code] | |
| io/src/common/ColumnDataConstants.hpp [code] | |
| io/src/fortests/CompareHdf5ResultsFiles.cpp [code] | |
| io/src/fortests/CompareHdf5ResultsFiles.hpp [code] | |
| io/src/reader/AbstractDataReader.hpp [code] | |
| io/src/reader/ColumnDataReader.cpp [code] | |
| io/src/reader/ColumnDataReader.hpp [code] | |
| io/src/reader/Hdf5DataReader.cpp [code] | |
| io/src/reader/Hdf5DataReader.hpp [code] | |
| io/src/writer/AbstractDataWriter.hpp [code] | |
| io/src/writer/ColumnDataWriter.cpp [code] | |
| io/src/writer/ColumnDataWriter.hpp [code] | |
| io/src/writer/DataWriterVariable.hpp [code] | |
| io/src/writer/Hdf5DataWriter.cpp [code] | |
| io/src/writer/Hdf5DataWriter.hpp [code] | |
| io/src/writer/ParallelColumnDataWriter.cpp [code] | |
| io/src/writer/ParallelColumnDataWriter.hpp [code] | |
| io/src/writer/SimpleDataWriter.cpp [code] | |
| io/src/writer/SimpleDataWriter.hpp [code] | |
| linalg/src/AbstractNonlinearSolver.hpp [code] | |
| linalg/src/FourthOrderTensor.hpp [code] | |
| linalg/src/LinearSystem.cpp [code] | |
| linalg/src/LinearSystem.hpp [code] | |
| linalg/src/PCBlockDiagonal.cpp [code] | |
| linalg/src/PCBlockDiagonal.hpp [code] | |
| linalg/src/PCLDUFactorisation.cpp [code] | |
| linalg/src/PCLDUFactorisation.hpp [code] | |
| linalg/src/PCTwoLevelsBlockDiagonal.cpp [code] | |
| linalg/src/PCTwoLevelsBlockDiagonal.hpp [code] | |
| linalg/src/PetscMatTools.cpp [code] | |
| linalg/src/PetscMatTools.hpp [code] | |
| linalg/src/PetscVecTools.cpp [code] | |
| linalg/src/PetscVecTools.hpp [code] | |
| linalg/src/SimpleNewtonNonlinearSolver.cpp [code] | |
| linalg/src/SimpleNewtonNonlinearSolver.hpp [code] | |
| linalg/src/SimplePetscNonlinearSolver.cpp [code] | |
| linalg/src/SimplePetscNonlinearSolver.hpp [code] | |
| linalg/src/UblasCustomFunctions.cpp [code] | |
| linalg/src/UblasCustomFunctions.hpp [code] | |
| linalg/src/UblasIncludes.hpp [code] | |
| linalg/src/UblasMatrixInclude.hpp [code] | |
| linalg/src/UblasVectorInclude.hpp [code] | |
| mesh/src/3rdparty/tetgen1.4.2/predicates.cpp [code] | |
| mesh/src/3rdparty/tetgen1.4.2/predicates.hpp [code] | |
| mesh/src/3rdparty/tetgen1.4.2/tetgen.cpp [code] | |
| mesh/src/3rdparty/triangle/triangle.cpp [code] | |
| mesh/src/common/AbstractChasteRegion.hpp [code] | |
| mesh/src/common/AbstractElement.cpp [code] | |
| mesh/src/common/AbstractElement.hpp [code] | |
| mesh/src/common/AbstractMesh.cpp [code] | |
| mesh/src/common/AbstractMesh.hpp [code] | |
| mesh/src/common/AbstractTetrahedralElement.cpp [code] | |
| mesh/src/common/AbstractTetrahedralElement.hpp [code] | |
| mesh/src/common/AbstractTetrahedralMesh.cpp [code] | |
| mesh/src/common/AbstractTetrahedralMesh.hpp [code] | |
| mesh/src/common/BoundaryElement.cpp [code] | |
| mesh/src/common/BoundaryElement.hpp [code] | |
| mesh/src/common/ChastePoint.cpp [code] | |
| mesh/src/common/ChastePoint.hpp [code] | |
| mesh/src/common/DistributedQuadraticMesh.cpp [code] | |
| mesh/src/common/DistributedQuadraticMesh.hpp [code] | |
| mesh/src/common/DistributedTetrahedralMesh.cpp [code] | |
| mesh/src/common/DistributedTetrahedralMesh.hpp [code] | |
| mesh/src/common/DistributedTetrahedralMeshPartitionType.hpp [code] | |
| mesh/src/common/Element.cpp [code] | |
| mesh/src/common/Element.hpp [code] | |
| mesh/src/common/MixedDimensionMesh.cpp [code] | |
| mesh/src/common/MixedDimensionMesh.hpp [code] | |
| mesh/src/common/MutableElement.cpp [code] | |
| mesh/src/common/MutableElement.hpp [code] | |
| mesh/src/common/MutableMesh.cpp [code] | |
| mesh/src/common/MutableMesh.hpp [code] | |
| mesh/src/common/Node.cpp [code] | |
| mesh/src/common/Node.hpp [code] | |
| mesh/src/common/NodeMap.cpp [code] | |
| mesh/src/common/NodeMap.hpp [code] | |
| mesh/src/common/NodePartitioner.cpp [code] | |
| mesh/src/common/NodePartitioner.hpp [code] | |
| mesh/src/common/NonCachedTetrahedralMesh.cpp [code] | |
| mesh/src/common/NonCachedTetrahedralMesh.hpp [code] | |
| mesh/src/common/QuadraticMesh.cpp [code] | |
| mesh/src/common/QuadraticMesh.hpp [code] | |
| mesh/src/common/QuadraticMeshHelper.cpp [code] | |
| mesh/src/common/QuadraticMeshHelper.hpp [code] | |
| mesh/src/common/TetrahedralMesh.cpp [code] | |
| mesh/src/common/TetrahedralMesh.hpp [code] | |
| mesh/src/reader/AbstractCachedMeshReader.cpp [code] | |
| mesh/src/reader/AbstractCachedMeshReader.hpp [code] | |
| mesh/src/reader/AbstractMeshReader.cpp [code] | |
| mesh/src/reader/AbstractMeshReader.hpp [code] | |
| mesh/src/reader/FemlabMeshReader.cpp [code] | |
| mesh/src/reader/FemlabMeshReader.hpp [code] | |
| mesh/src/reader/GenericMeshReader.hpp [code] | |
| mesh/src/reader/MemfemMeshReader.cpp [code] | |
| mesh/src/reader/MemfemMeshReader.hpp [code] | |
| mesh/src/reader/TrianglesMeshReader.cpp [code] | |
| mesh/src/reader/TrianglesMeshReader.hpp [code] | |
| mesh/src/reader/VtkMeshReader.cpp [code] | |
| mesh/src/reader/VtkMeshReader.hpp [code] | |
| mesh/src/utilities/AbstractPerElementWriter.hpp [code] | |
| mesh/src/utilities/BoxCollection.cpp [code] | |
| mesh/src/utilities/BoxCollection.hpp [code] | |
| mesh/src/utilities/ChasteCuboid.cpp [code] | |
| mesh/src/utilities/ChasteCuboid.hpp [code] | |
| mesh/src/utilities/ChasteEllipsoid.cpp [code] | |
| mesh/src/utilities/ChasteEllipsoid.hpp [code] | |
| mesh/src/utilities/ChasteNodesList.cpp [code] | |
| mesh/src/utilities/ChasteNodesList.hpp [code] | |
| mesh/src/utilities/CuboidMeshConstructor.cpp [code] | |
| mesh/src/utilities/CuboidMeshConstructor.hpp [code] | |
| mesh/src/utilities/DistanceMapCalculator.cpp [code] | |
| mesh/src/utilities/DistanceMapCalculator.hpp [code] | |
| mesh/src/vertex/MutableVertexMesh.cpp [code] | |
| mesh/src/vertex/MutableVertexMesh.hpp [code] | |
| mesh/src/vertex/VertexElement.cpp [code] | |
| mesh/src/vertex/VertexElement.hpp [code] | |
| mesh/src/vertex/VertexElementMap.cpp [code] | |
| mesh/src/vertex/VertexElementMap.hpp [code] | |
| mesh/src/vertex/VertexMesh.cpp [code] | |
| mesh/src/vertex/VertexMesh.hpp [code] | |
| mesh/src/vertex/VertexMeshReader.cpp [code] | |
| mesh/src/vertex/VertexMeshReader.hpp [code] | |
| mesh/src/vertex/VertexMeshWriter.cpp [code] | |
| mesh/src/vertex/VertexMeshWriter.hpp [code] | |
| mesh/src/writer/AbstractMeshWriter.cpp [code] | |
| mesh/src/writer/AbstractMeshWriter.hpp [code] | |
| mesh/src/writer/AbstractTetrahedralMeshWriter.cpp [code] | |
| mesh/src/writer/AbstractTetrahedralMeshWriter.hpp [code] | |
| mesh/src/writer/CmguiDeformedSolutionsWriter.cpp [code] | |
| mesh/src/writer/CmguiDeformedSolutionsWriter.hpp [code] | |
| mesh/src/writer/CmguiMeshWriter.cpp [code] | |
| mesh/src/writer/CmguiMeshWriter.hpp [code] | |
| mesh/src/writer/MeshalyzerMeshWriter.cpp [code] | |
| mesh/src/writer/MeshalyzerMeshWriter.hpp [code] | |
| mesh/src/writer/TrianglesMeshWriter.cpp [code] | |
| mesh/src/writer/TrianglesMeshWriter.hpp [code] | |
| mesh/src/writer/VtkMeshWriter.cpp [code] | |
| mesh/src/writer/VtkMeshWriter.hpp [code] | |
| ode/src/common/AbstractCvodeSystem.cpp [code] | |
| ode/src/common/AbstractCvodeSystem.hpp [code] | |
| ode/src/common/AbstractOdeSystem.cpp [code] | |
| ode/src/common/AbstractOdeSystem.hpp [code] | |
| ode/src/common/AbstractOdeSystemForCoupledPdeSystem.hpp [code] | |
| ode/src/common/AbstractOdeSystemInformation.cpp [code] | |
| ode/src/common/AbstractOdeSystemInformation.hpp [code] | |
| ode/src/common/AbstractOdeSystemWithAnalyticJacobian.hpp [code] | |
| ode/src/common/AbstractParameterisedSystem.cpp [code] | |
| ode/src/common/AbstractParameterisedSystem.hpp [code] | |
| ode/src/common/AbstractUntemplatedParameterisedSystem.cpp [code] | |
| ode/src/common/AbstractUntemplatedParameterisedSystem.hpp [code] | |
| ode/src/common/CombinedOdeSystem.cpp [code] | |
| ode/src/common/CombinedOdeSystem.hpp [code] | |
| ode/src/common/CombinedOdeSystemInformation.cpp [code] | |
| ode/src/common/CombinedOdeSystemInformation.hpp [code] | |
| ode/src/common/OdeSolution.cpp [code] | |
| ode/src/common/OdeSolution.hpp [code] | |
| ode/src/common/OdeSystemInformation.hpp [code] | |
| ode/src/fortests/OdeSystemForCoupledHeatEquation.hpp [code] | |
| ode/src/fortests/OdeSystemForCoupledHeatEquationWithSource.hpp [code] | |
| ode/src/solver/AbstractIvpOdeSolver.cpp [code] | |
| ode/src/solver/AbstractIvpOdeSolver.hpp [code] | |
| ode/src/solver/AbstractOneStepIvpOdeSolver.cpp [code] | |
| ode/src/solver/AbstractOneStepIvpOdeSolver.hpp [code] | |
| ode/src/solver/BackwardEulerIvpOdeSolver.cpp [code] | |
| ode/src/solver/BackwardEulerIvpOdeSolver.hpp [code] | |
| ode/src/solver/CvodeAdaptor.cpp [code] | |
| ode/src/solver/CvodeAdaptor.hpp [code] | |
| ode/src/solver/EulerIvpOdeSolver.cpp [code] | |
| ode/src/solver/EulerIvpOdeSolver.hpp [code] | |
| ode/src/solver/HeunIvpOdeSolver.cpp [code] | |
| ode/src/solver/HeunIvpOdeSolver.hpp [code] | |
| ode/src/solver/MockEulerIvpOdeSolver.cpp [code] | |
| ode/src/solver/MockEulerIvpOdeSolver.hpp [code] | |
| ode/src/solver/RungeKutta2IvpOdeSolver.cpp [code] | |
| ode/src/solver/RungeKutta2IvpOdeSolver.hpp [code] | |
| ode/src/solver/RungeKutta4IvpOdeSolver.cpp [code] | |
| ode/src/solver/RungeKutta4IvpOdeSolver.hpp [code] | |
| ode/src/solver/RungeKuttaFehlbergIvpOdeSolver.cpp [code] | |
| ode/src/solver/RungeKuttaFehlbergIvpOdeSolver.hpp [code] | |
| pde/src/common/AbstractBoundaryCondition.hpp [code] | |
| pde/src/common/AbstractBoundaryConditionsContainer.cpp [code] | |
| pde/src/common/AbstractBoundaryConditionsContainer.hpp [code] | |
| pde/src/common/AbstractBoundaryConditionsContainerImplementation.hpp [code] | |
| pde/src/common/AbstractFunctionalCalculator.hpp [code] | |
| pde/src/common/AbstractTimeAdaptivityController.hpp [code] | |
| pde/src/common/BoundaryConditionsContainer.cpp [code] | |
| pde/src/common/BoundaryConditionsContainer.hpp [code] | |
| pde/src/common/BoundaryConditionsContainerImplementation.hpp [code] | |
| pde/src/common/ConstBoundaryCondition.cpp [code] | |
| pde/src/common/ConstBoundaryCondition.hpp [code] | |
| pde/src/common/FineCoarseMeshPair.cpp [code] | |
| pde/src/common/FineCoarseMeshPair.hpp [code] | |
| pde/src/common/FunctionalBoundaryCondition.cpp [code] | |
| pde/src/common/FunctionalBoundaryCondition.hpp [code] | |
| pde/src/common/PdeSimulationTime.cpp [code] | |
| pde/src/common/PdeSimulationTime.hpp [code] | |
| pde/src/common/QuadraturePointsGroup.cpp [code] | |
| pde/src/common/QuadraturePointsGroup.hpp [code] | |
| pde/src/postprocessing/AbstractHdf5Converter.cpp [code] | |
| pde/src/postprocessing/AbstractHdf5Converter.hpp [code] | |
| pde/src/postprocessing/Hdf5ToTxtConverter.cpp [code] | |
| pde/src/postprocessing/Hdf5ToTxtConverter.hpp [code] | |
| pde/src/postprocessing/Hdf5ToVtkConverter.cpp [code] | |
| pde/src/postprocessing/Hdf5ToVtkConverter.hpp [code] | |
| pde/src/problem/AbstractLinearEllipticPde.hpp [code] | |
| pde/src/problem/AbstractLinearParabolicPde.hpp [code] | |
| pde/src/problem/AbstractLinearParabolicPdeSystemForCoupledOdeSystem.hpp [code] | |
| pde/src/problem/AbstractNonlinearEllipticPde.hpp [code] | |
| pde/src/solver/AbstractAssemblerSolverHybrid.hpp [code] | |
| pde/src/solver/AbstractDynamicLinearPdeSolver.hpp [code] | |
| pde/src/solver/AbstractFeAssemblerCommon.hpp [code] | |
| pde/src/solver/AbstractFeAssemblerInterface.hpp [code] | |
| pde/src/solver/AbstractFeCableIntegralAssembler.hpp [code] | |
| pde/src/solver/AbstractFeSurfaceIntegralAssembler.hpp [code] | |
| pde/src/solver/AbstractFeVolumeIntegralAssembler.hpp [code] | |
| pde/src/solver/AbstractLinearPdeSolver.hpp [code] | |
| pde/src/solver/AbstractNonlinearAssemblerSolverHybrid.hpp [code] | |
| pde/src/solver/AbstractStaticLinearPdeSolver.hpp [code] | |
| pde/src/solver/GaussianQuadratureRule.cpp [code] | |
| pde/src/solver/GaussianQuadratureRule.hpp [code] | |
| pde/src/solver/LinearBasisFunction.cpp [code] | |
| pde/src/solver/LinearBasisFunction.hpp [code] | |
| pde/src/solver/LinearParabolicPdeSystemWithCoupledOdeSystemSolver.hpp [code] | |
| pde/src/solver/MassMatrixAssembler.hpp [code] | |
| pde/src/solver/NaturalNeumannSurfaceTermAssembler.hpp [code] | |
| pde/src/solver/QuadraticBasisFunction.cpp [code] | |
| pde/src/solver/QuadraticBasisFunction.hpp [code] | |
| pde/src/solver/SimpleLinearEllipticSolver.cpp [code] | |
| pde/src/solver/SimpleLinearEllipticSolver.hpp [code] | |
| pde/src/solver/SimpleLinearParabolicSolver.cpp [code] | |
| pde/src/solver/SimpleLinearParabolicSolver.hpp [code] | |
| pde/src/solver/SimpleNonlinearEllipticSolver.cpp [code] | |
| pde/src/solver/SimpleNonlinearEllipticSolver.hpp [code] | |
| pde/src/solver/StiffnessMatrixAssembler.hpp [code] | |
1.7.4