AbstractOffLatticeCellPopulation.hpp

/*

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*/

#ifndef ABSTRACTOFFLATTICECELLPOPULATION_HPP_
#define ABSTRACTOFFLATTICECELLPOPULATION_HPP_

#include "AbstractCellPopulation.hpp"

// Needed here to avoid serialization errors (on Boost<1.37)
#include "WildTypeCellMutationState.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM=ELEMENT_DIM>
class AbstractOffLatticeCellPopulation : public AbstractCellPopulation<ELEMENT_DIM,SPACE_DIM>
{
private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM> >(*this);
        archive & mDampingConstantNormal;
        archive & mDampingConstantMutant;
        archive & mAbsoluteMovementThreshold;
    }

protected:
    double mDampingConstantNormal;

    double mDampingConstantMutant;

    double mAbsoluteMovementThreshold;

    AbstractOffLatticeCellPopulation(AbstractMesh<ELEMENT_DIM, SPACE_DIM>& rMesh);

public:

    AbstractOffLatticeCellPopulation( AbstractMesh<ELEMENT_DIM, SPACE_DIM>& rMesh,
                                    std::vector<CellPtr>& rCells,
                                    const std::vector<unsigned> locationIndices=std::vector<unsigned>());

    virtual unsigned AddNode(Node<SPACE_DIM>* pNewNode)=0;

    virtual void SetNode(unsigned nodeIndex, ChastePoint<SPACE_DIM>& rNewLocation)=0;

    virtual void UpdateNodeLocations(const std::vector< c_vector<double, SPACE_DIM> >& rNodeForces, double dt)=0;

    virtual double GetDampingConstant(unsigned nodeIndex)=0;

    void SetDampingConstantNormal(double dampingConstantNormal);

    void SetDampingConstantMutant(double dampingConstantMutant);

    void SetAbsoluteMovementThreshold(double absoluteMovementThreshold);

    double GetAbsoluteMovementThreshold();

    double GetDampingConstantNormal();

    double GetDampingConstantMutant();

    virtual void OutputCellPopulationParameters(out_stream& rParamsFile);
};

#endif /*ABSTRACTOFFLATTICECELLPOPULATION_HPP_*/