PlaneBasedCellKiller.hpp

/*

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 * Redistributions in binary form must reproduce the above copyright notice,
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*/

#ifndef PLANEBASEDCELLKILLER_HPP_
#define PLANEBASEDCELLKILLER_HPP_

#include "AbstractCellKiller.hpp"

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
#include <boost/serialization/vector.hpp>

template<unsigned DIM>
class PlaneBasedCellKiller : public AbstractCellKiller<DIM>
{
private:

    c_vector<double, DIM> mPointOnPlane;

    c_vector<double, DIM> mNormalToPlane;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellKiller<DIM> >(*this);
    }

public:

    PlaneBasedCellKiller(AbstractCellPopulation<DIM>* pCellPopulation,
                          c_vector<double, DIM> point,
                          c_vector<double, DIM> normal);

    const c_vector<double, DIM>& rGetPointOnPlane() const;

    const c_vector<double, DIM>& rGetNormalToPlane() const;

    virtual void CheckAndLabelCellsForApoptosisOrDeath();

    void OutputCellKillerParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(PlaneBasedCellKiller)

namespace boost
{
namespace serialization
{
template<class Archive, unsigned DIM>
inline void save_construct_data(
    Archive & ar, const PlaneBasedCellKiller<DIM> * t, const BOOST_PFTO unsigned int file_version)
{
    // Save data required to construct instance
    const AbstractCellPopulation<DIM>* const p_cell_population = t->GetCellPopulation();
    ar << p_cell_population;

    // Archive c_vectors one component at a time
    c_vector<double, DIM> point = t->rGetPointOnPlane();
    for (unsigned i=0; i<DIM; i++)
    {
        ar << point[i];
    }
    c_vector<double, DIM> normal = t->rGetNormalToPlane();
    for (unsigned i=0; i<DIM; i++)
    {
        ar << normal[i];
    }
}

template<class Archive, unsigned DIM>
inline void load_construct_data(
    Archive & ar, PlaneBasedCellKiller<DIM> * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    AbstractCellPopulation<DIM>* p_cell_population;
    ar >> p_cell_population;

    // Archive c_vectors one component at a time
    c_vector<double, DIM> point;
    for (unsigned i=0; i<DIM; i++)
    {
        ar >> point[i];
    }
    c_vector<double, DIM> normal;
    for (unsigned i=0; i<DIM; i++)
    {
        ar >> normal[i];
    }

    // Invoke inplace constructor to initialise instance
    ::new(t)PlaneBasedCellKiller<DIM>(p_cell_population, point, normal);
}
}
} // namespace ...

#endif /*PLANEBASEDCELLKILLER_HPP_*/