AdhesionPottsUpdateRule.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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This file is part of Chaste.

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*/

#ifndef ADHESIONUPDATERULE_HPP_
#define ADHESIONUPDATERULE_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractPottsUpdateRule.hpp"
#include "PottsBasedCellPopulation.hpp"

// Needed here to avoid serialization errors (on Boost<1.37)
#include "CellLabel.hpp"

template<unsigned DIM>
class AdhesionPottsUpdateRule : public AbstractPottsUpdateRule<DIM>
{
friend class TestPottsUpdateRules;

private:

    double mCellCellAdhesionEnergyParameter;

    double mCellBoundaryAdhesionEnergyParameter;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractPottsUpdateRule<DIM> >(*this);
        archive & mCellCellAdhesionEnergyParameter;
        archive & mCellBoundaryAdhesionEnergyParameter;
    }

public:

    AdhesionPottsUpdateRule();

    ~AdhesionPottsUpdateRule();

    double EvaluateHamiltonianContribution(unsigned currentNodeIndex,
                                           unsigned targetNodeIndex,
                                           PottsBasedCellPopulation<DIM>& rCellPopulation);

    virtual double GetCellCellAdhesionEnergy(CellPtr pCellA, CellPtr pCellB);

    virtual double GetCellBoundaryAdhesionEnergy(CellPtr pCell);

    double GetCellCellAdhesionEnergyParameter();

    double GetCellBoundaryAdhesionEnergyParameter();

    void SetCellCellAdhesionEnergyParameter(double cellCellAdhesionEnergyEnergyParameter);

    void SetCellBoundaryAdhesionEnergyParameter(double cellBoundaryAdhesionEnergyParameter);

    void OutputUpdateRuleParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(AdhesionPottsUpdateRule)

#endif /*ADHESIONUPDATERULE_HPP_*/