RadialSloughingCellKiller.cpp

/*

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   software without specific prior written permission.

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*/
#include "RadialSloughingCellKiller.hpp"
#include "AbstractCentreBasedCellPopulation.hpp"

RadialSloughingCellKiller::RadialSloughingCellKiller(AbstractCellPopulation<2>* pCellPopulation, c_vector<double,2> centre, double radius)
    : AbstractCellKiller<2>(pCellPopulation),
      mCentre(centre),
      mRadius(radius)
{
}

c_vector<double,2> RadialSloughingCellKiller::GetCentre() const
{
    return mCentre;
}

double RadialSloughingCellKiller::GetRadius() const
{
    return mRadius;
}

void RadialSloughingCellKiller::CheckAndLabelCellsForApoptosisOrDeath()
{
    for (AbstractCellPopulation<2>::Iterator cell_iter = this->mpCellPopulation->Begin();
         cell_iter != this->mpCellPopulation->End();
         ++cell_iter)
    {
        // Get distance from centre of cell population
        double r = norm_2(this->mpCellPopulation->GetLocationOfCellCentre(*cell_iter) - mCentre);

        if (r > mRadius)
        {
            cell_iter->Kill();
        }
    }
}

void RadialSloughingCellKiller::OutputCellKillerParameters(out_stream& rParamsFile)
{
    *rParamsFile << "\t\t\t<xCentre>" << mCentre[0] << "</xCentre>\n";
    *rParamsFile << "\t\t\t<yCentre>" << mCentre[1] << "</yCentre>\n";
    *rParamsFile << "\t\t\t<mRadius>" << mRadius << "</mRadius>\n";

    // Call method on direct parent class
    AbstractCellKiller<2>::OutputCellKillerParameters(rParamsFile);
}

// Serialization for Boost >= 1.36
#include "SerializationExportWrapperForCpp.hpp"
CHASTE_CLASS_EXPORT(RadialSloughingCellKiller)