BidomainAssembler.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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*/


#ifndef BIDOMAINASSEMBLER_HPP_
#define BIDOMAINASSEMBLER_HPP_

#include "AbstractCardiacFeVolumeIntegralAssembler.hpp"
#include "BidomainTissue.hpp"
#include "HeartConfig.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class BidomainAssembler : public AbstractCardiacFeVolumeIntegralAssembler<ELEMENT_DIM,SPACE_DIM,2,false,true,CARDIAC>
{
protected:
    HeartConfig* mpConfig;

    virtual c_matrix<double,2*(ELEMENT_DIM+1),2*(ELEMENT_DIM+1)> ComputeMatrixTerm(
        c_vector<double, ELEMENT_DIM+1> &rPhi,
        c_matrix<double, SPACE_DIM, ELEMENT_DIM+1> &rGradPhi,
        ChastePoint<SPACE_DIM> &rX,
        c_vector<double,2> &rU,
        c_matrix<double, 2, SPACE_DIM> &rGradU /* not used */,
        Element<ELEMENT_DIM,SPACE_DIM>* pElement);

public:

    BidomainAssembler(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                      BidomainTissue<SPACE_DIM>* pTissue,
                      unsigned numQuadPoints = 2);

    ~BidomainAssembler()
    {
    }
};

#endif /*BIDOMAINASSEMBLER_HPP_*/