CellwiseSourcePde.hpp

/*

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*/

#ifndef CELLWISESOURCEPDE_HPP_
#define CELLWISESOURCEPDE_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "MeshBasedCellPopulation.hpp"
#include "AbstractLinearEllipticPde.hpp"

template<unsigned DIM>
class CellwiseSourcePde : public AbstractLinearEllipticPde<DIM,DIM>
{
    friend class TestCellBasedPdes;

private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
       archive & boost::serialization::base_object<AbstractLinearEllipticPde<DIM, DIM> >(*this);
       archive & mCoefficient;
    }

    MeshBasedCellPopulation<DIM>& mrCellPopulation;

    double mCoefficient;

public:

    CellwiseSourcePde(MeshBasedCellPopulation<DIM>& rCellPopulation, double coefficient=0.0);

    const MeshBasedCellPopulation<DIM>& rGetCellPopulation() const;

    double GetCoefficient() const;

    double ComputeConstantInUSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement);

    double ComputeLinearInUCoeffInSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement);

    double ComputeLinearInUCoeffInSourceTermAtNode(const Node<DIM>& rNode);

    c_matrix<double,DIM,DIM> ComputeDiffusionTerm(const ChastePoint<DIM>& rX);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(CellwiseSourcePde)

namespace boost
{
namespace serialization
{
template<class Archive, unsigned DIM>
inline void save_construct_data(
    Archive & ar, const CellwiseSourcePde<DIM>* t, const BOOST_PFTO unsigned int file_version)
{
    // Save data required to construct instance
    const MeshBasedCellPopulation<DIM>* p_cell_population = &(t->rGetCellPopulation());
    ar & p_cell_population;
}

template<class Archive, unsigned DIM>
inline void load_construct_data(
    Archive & ar, CellwiseSourcePde<DIM>* t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    MeshBasedCellPopulation<DIM>* p_cell_population;
    ar >> p_cell_population;

    // Invoke inplace constructor to initialise instance
    ::new(t)CellwiseSourcePde<DIM>(*p_cell_population);
}
}
} // namespace ...

#endif /*CELLWISESOURCEPDE_HPP_*/