MonodomainTissue.hpp

/*

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This file is part of Chaste.

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 * Redistributions in binary form must reproduce the above copyright notice,
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*/


#ifndef MONODOMAINTISSUE_HPP_
#define MONODOMAINTISSUE_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/vector.hpp>
#include <boost/serialization/base_object.hpp>

#include <vector>
#include "AbstractCardiacTissue.hpp"


template <unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainTissue : public virtual AbstractCardiacTissue<ELEMENT_DIM,SPACE_DIM>
{
private:
    friend class TestMonodomainTissue;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCardiacTissue<ELEMENT_DIM, SPACE_DIM> >(*this);
    }


public:
    MonodomainTissue(AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>* pCellFactory, bool exchangeHalos=false);

    MonodomainTissue(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh);
};


// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp" // Must be last
EXPORT_TEMPLATE_CLASS2(MonodomainTissue, 1, 1)
EXPORT_TEMPLATE_CLASS2(MonodomainTissue, 1, 2)
EXPORT_TEMPLATE_CLASS2(MonodomainTissue, 1, 3)
EXPORT_TEMPLATE_CLASS2(MonodomainTissue, 2, 2)
EXPORT_TEMPLATE_CLASS2(MonodomainTissue, 3, 3)

namespace boost
{
namespace serialization
{

template<class Archive, unsigned ELEMENT_DIM, unsigned SPACE_DIM>
inline void save_construct_data(
    Archive & ar, const MonodomainTissue<ELEMENT_DIM, SPACE_DIM> * t, const unsigned int file_version)
{
    const AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* p_mesh = t->pGetMesh();
    ar & p_mesh;

    // CreateIntracellularConductivityTensor() is called by constructor and uses HeartConfig. So make sure that it is
    // archived too (needs doing before construction so appears here instead of usual archive location).
    HeartConfig* p_config = HeartConfig::Instance();
    ar & *p_config;
    ar & p_config;
}

template<class Archive, unsigned ELEMENT_DIM, unsigned SPACE_DIM>
inline void load_construct_data(
    Archive & ar, MonodomainTissue<ELEMENT_DIM, SPACE_DIM> * t, const unsigned int file_version)
{
    AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* p_mesh;
    ar & p_mesh;

    // CreateIntracellularConductivityTensor() is called by AbstractCardiacTissue constructor and uses HeartConfig.
    // So make sure that it is archived too (needs doing before construction so appears here instead of usual archive location).
    HeartConfig* p_config = HeartConfig::Instance();
    ar & *p_config;
    ar & p_config;

    ::new(t)MonodomainTissue<ELEMENT_DIM, SPACE_DIM>(p_mesh);
}
}
} // namespace ...


#endif /*MONODOMAINTISSUE_HPP_*/