AbstractOnLatticeCellPopulation.cpp

/*

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*/

#include "AbstractOnLatticeCellPopulation.hpp"

template<unsigned DIM>
AbstractOnLatticeCellPopulation<DIM>::AbstractOnLatticeCellPopulation(AbstractMesh<DIM, DIM>& rMesh,
                                                                    std::vector<CellPtr>& rCells,
                                                                  const std::vector<unsigned> locationIndices,
                                                                  bool deleteMesh)
    : AbstractCellPopulation<DIM>(rMesh, rCells, locationIndices),
      mDeleteMesh(deleteMesh),
      mUpdateNodesInRandomOrder(true),
      mIterateRandomlyOverUpdateRuleCollection(false)
{
}

template<unsigned DIM>
AbstractOnLatticeCellPopulation<DIM>::AbstractOnLatticeCellPopulation(AbstractMesh<DIM, DIM>& rMesh)
    : AbstractCellPopulation<DIM>(rMesh),
      mDeleteMesh(true),
      mUpdateNodesInRandomOrder(true),
      mIterateRandomlyOverUpdateRuleCollection(false)
{
}

template<unsigned DIM>
AbstractOnLatticeCellPopulation<DIM>::~AbstractOnLatticeCellPopulation()
{
}

template<unsigned DIM>
bool AbstractOnLatticeCellPopulation<DIM>::GetUpdateNodesInRandomOrder()
{
    return mUpdateNodesInRandomOrder;
}

template<unsigned DIM>
void AbstractOnLatticeCellPopulation<DIM>::SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder)
{
    mUpdateNodesInRandomOrder = updateNodesInRandomOrder;
}

template<unsigned DIM>
void AbstractOnLatticeCellPopulation<DIM>::SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly)
{
    mIterateRandomlyOverUpdateRuleCollection = iterateRandomly;
}

template<unsigned DIM>
bool AbstractOnLatticeCellPopulation<DIM>::GetIterateRandomlyOverUpdateRuleCollection()
{
    return mIterateRandomlyOverUpdateRuleCollection;
}

template<unsigned DIM>
void AbstractOnLatticeCellPopulation<DIM>::SetNode(unsigned nodeIndex, ChastePoint<DIM>& rNewLocation)
{
    EXCEPTION("SetNode() cannot be called on a subclass of AbstractOnLatticeCellPopulation.");
}

template<unsigned DIM>
void AbstractOnLatticeCellPopulation<DIM>::OutputCellPopulationParameters(out_stream& rParamsFile)
{
    *rParamsFile << "\t\t<UpdateNodesInRandomOrder>" << mUpdateNodesInRandomOrder << "</UpdateNodesInRandomOrder>\n";
    *rParamsFile << "\t\t<IterateRandomlyOverUpdateRuleCollection>" << mIterateRandomlyOverUpdateRuleCollection << "</IterateRandomlyOverUpdateRuleCollection>\n";

    // Call method on direct parent class
    AbstractCellPopulation<DIM>::OutputCellPopulationParameters(rParamsFile);
}

// Explicit instantiation

template class AbstractOnLatticeCellPopulation<1>;
template class AbstractOnLatticeCellPopulation<2>;
template class AbstractOnLatticeCellPopulation<3>;