Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 00037 #include "CombinedOdeSystemInformation.hpp" 00038 00039 #include <cassert> 00040 00041 boost::shared_ptr<CombinedOdeSystemInformation> CombinedOdeSystemInformation::Instance(const std::vector<AbstractOdeSystem*>& rSubsystems) 00042 { 00043 // Get the information for the subsystems 00044 std::vector<boost::shared_ptr<const AbstractOdeSystemInformation> > info_vec; 00045 info_vec.reserve(rSubsystems.size()); 00046 for (unsigned i=0; i<rSubsystems.size(); i++) 00047 { 00048 info_vec.push_back(rSubsystems[i]->GetSystemInformation()); 00049 } 00050 00051 boost::shared_ptr<CombinedOdeSystemInformation> p_inst; 00052 00053 // Search to see if we have an information object for this sequence of 00054 // subsystems already. 00055 for (unsigned i=0; i<msInstances.size(); i++) 00056 { 00057 if (info_vec.size() == msInstances[i].subsystemInformation.size()) 00058 { 00059 bool equal = true; 00060 for (unsigned j=0; j<info_vec.size(); j++) 00061 { 00062 if (msInstances[i].subsystemInformation[j] != info_vec[j]) 00063 { 00064 equal = false; 00065 break; 00066 } 00067 } 00068 if (equal) 00069 { 00070 p_inst = msInstances[i].pInfoInstance; 00071 break; 00072 } 00073 } 00074 } 00075 00076 // Create a new object if needed 00077 if (!p_inst) 00078 { 00079 p_inst.reset(new CombinedOdeSystemInformation(info_vec)); 00080 struct InstancePointers inst; 00081 inst.subsystemInformation = info_vec; 00082 inst.pInfoInstance = p_inst; 00083 msInstances.push_back(inst); 00084 } 00085 00086 return p_inst; 00087 } 00088 00089 CombinedOdeSystemInformation::CombinedOdeSystemInformation(const std::vector<boost::shared_ptr<const AbstractOdeSystemInformation> >& rSubsystemInfo) 00090 { 00091 // Figure out our size 00092 unsigned total_system_size = 0u; 00093 for (unsigned i=0; i<rSubsystemInfo.size(); i++) 00094 { 00095 total_system_size += rSubsystemInfo[i]->rGetStateVariableNames().size(); 00096 } 00097 mVariableNames.reserve(total_system_size); 00098 mVariableUnits.reserve(total_system_size); 00099 mInitialConditions.reserve(total_system_size); 00100 00101 // Set up our info from the subsystems 00102 for (unsigned i=0; i<rSubsystemInfo.size(); i++) 00103 { 00104 std::vector<double> inits = rSubsystemInfo[i]->GetInitialConditions(); 00105 const std::vector<std::string>& names = rSubsystemInfo[i]->rGetStateVariableNames(); 00106 const std::vector<std::string>& units = rSubsystemInfo[i]->rGetStateVariableUnits(); 00107 unsigned system_size = names.size(); 00108 assert(inits.size() == system_size); 00109 assert(units.size() == system_size); 00110 00111 for (unsigned j=0; j<system_size; j++) 00112 { 00113 mVariableNames.push_back(names[j]); 00114 mVariableUnits.push_back(units[j]); 00115 mInitialConditions.push_back(inits[j]); 00116 } 00117 } 00118 00119 mInitialised = true; 00120 } 00121 00122 #define COVERAGE_IGNORE 00123 void CombinedOdeSystemInformation::Initialise() 00124 { 00125 // does nothing; work done in constructor 00126 // but we need the method because it is pure in our base class 00127 } 00128 00130 std::vector<struct CombinedOdeSystemInformation::InstancePointers> CombinedOdeSystemInformation::msInstances; 00131 #undef COVERAGE_IGNORE