Chaste Release::3.1
ChastePoint.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
00018    and/or other materials provided with the distribution.
00019  * Neither the name of the University of Oxford nor the names of its
00020    contributors may be used to endorse or promote products derived from this
00021    software without specific prior written permission.
00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 
00037 #ifndef _CHASTEPOINT_HPP_
00038 #define _CHASTEPOINT_HPP_
00039 
00040 #include "ChasteSerialization.hpp"
00041 #include "UblasVectorInclude.hpp"
00042 #include <vector>
00043 
00044 
00048 template<unsigned DIM>
00049 class ChastePoint
00050 {
00052     friend class boost::serialization::access;
00059     template<class Archive>
00060     void serialize(Archive & archive, const unsigned int version)
00061     {
00062         //archive & mLocation; //earlier versions of boost are unable to do this. See #1709
00063     }
00064 
00065 private:
00066 
00068     c_vector<double, DIM> mLocation;
00069 
00070 public:
00071 
00086     ChastePoint(double v1=0, double v2=0, double v3=0);
00087 
00095     ChastePoint(std::vector<double> coords);
00096 
00102     ChastePoint(c_vector<double, DIM> location);
00103 
00107     c_vector<double, DIM>& rGetLocation();
00108 
00114     double operator[] (unsigned i) const;
00115 
00121     double GetWithDefault(unsigned i, double def=0.0) const;
00122 
00129     void SetCoordinate(unsigned i, double value);
00130 
00137     bool IsSamePoint(const ChastePoint<DIM>& rPoint) const;
00138 };
00139 
00140 
00141 #include "SerializationExportWrapper.hpp"
00142 // Declare identifier for the serializer
00143 EXPORT_TEMPLATE_CLASS_SAME_DIMS(ChastePoint)
00144 
00145 namespace boost
00146 {
00147 namespace serialization
00148 {
00149 
00150 template<class Archive, unsigned SPACE_DIM>
00151 inline void save_construct_data(
00152     Archive & ar, const ChastePoint<SPACE_DIM> * t, const BOOST_PFTO unsigned int file_version)
00153 {
00154     for (unsigned i = 0; i < SPACE_DIM; i ++)
00155     {
00156         //we archive coordinates of mLocation one by one
00157         //this is because earlier version of boost (<1.40, I think) cannot archive c_vectors
00158         double coord = t->GetWithDefault(i);
00159         ar & coord;
00160     }
00161 }
00162 
00167 template<class Archive,unsigned SPACE_DIM>
00168 inline void load_construct_data(
00169     Archive & ar, ChastePoint<SPACE_DIM> * t, const unsigned int file_version)
00170 {
00171     std::vector<double> coords;
00172     coords.resize(SPACE_DIM);
00173     for (unsigned i=0; i<SPACE_DIM; i++)
00174     {
00175         double coordinate;
00176         ar & coordinate;//resume coordinates one by one
00177         coords[i] = coordinate;
00178     }
00179     //use constructor with standard vectors to re-build the object
00180      ::new(t)ChastePoint<SPACE_DIM>(coords);
00181 }
00182 }
00183 } // namespace ...
00184 
00185 
00191 template<>
00192 class ChastePoint<0>
00193 {
00194 public:
00203     ChastePoint(double v1=0, double v2=0, double v3=0);
00204 
00211     double operator[] (unsigned i) const;
00212 };
00213 
00214 #endif //_CHASTEPOINT_HPP_