Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #include "AbstractSteadyStateRunner.hpp" 00037 00038 #ifdef CHASTE_CVODE 00039 00040 AbstractSteadyStateRunner::AbstractSteadyStateRunner(boost::shared_ptr<AbstractCvodeCell> pModel) 00041 : mpModel(pModel), 00042 mNumEvaluations(0u), 00043 mMaxNumPaces(10000u) 00044 {} 00045 00046 00047 bool AbstractSteadyStateRunner::RunToSteadyState() 00048 { 00049 // Get timing information from the cell stimulus (only works for regular stimuli) 00050 if (!boost::dynamic_pointer_cast<RegularStimulus>(mpModel->GetStimulusFunction()) ) 00051 { 00052 EXCEPTION("Steady State approximations only work for models with RegularStimulus objects."); 00053 } 00054 00055 RunToSteadyStateImplementation(); 00056 00057 if (mNumEvaluations<mMaxNumPaces) 00058 { 00059 std::cout << "Steady state detected after " << GetNumEvaluations() << " paces." << std::endl; 00060 return true; 00061 } 00062 else 00063 { 00064 std::cout << "Steady state not reached after "<< GetNumEvaluations() << " paces." << std::endl; 00065 WARNING("Model " << mpModel->GetSystemName() << " did not reach steady state within " << mMaxNumPaces << " paces."); 00066 return false; 00067 } 00068 } 00069 00070 00071 unsigned AbstractSteadyStateRunner::GetNumEvaluations() 00072 { 00073 return mNumEvaluations; 00074 } 00075 00076 00077 void AbstractSteadyStateRunner::SetMaxNumPaces(unsigned numPaces) 00078 { 00079 if (numPaces==0u) 00080 { 00081 EXCEPTION("Please set a maximum number of paces that is positive"); 00082 } 00083 mMaxNumPaces = numPaces; 00084 } 00085 00086 #endif // CHASTE_CVODE 00087