AbstractCardiacCellFactory.cpp

/*

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*/

#include "AbstractCardiacCellFactory.hpp"
#include "FakeBathCell.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractCardiacCellInterface*  AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::CreateCardiacCellForNode(
    unsigned nodeIndex)
{
    if (HeartRegionCode::IsRegionBath( mpMesh->GetNodeOrHaloNode(nodeIndex)->GetRegion() ))
    {
        return new FakeBathCell(this->mpSolver, this->mpZeroStimulus);
    }
    else
    {
        return CreateCardiacCellForTissueNode(nodeIndex);
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::FinaliseCellCreation(
    std::vector< AbstractCardiacCellInterface* >* pCellsDistributed,
    unsigned lo,
    unsigned hi)
{
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::FillInCellularTransmuralAreas()
{
    //implemented in subclasses
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
unsigned AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::GetNumberOfCells()
{
    assert(mpMesh != NULL);
    return mpMesh->GetNumNodes();
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::AbstractCardiacCellFactory(
        boost::shared_ptr<AbstractIvpOdeSolver> pSolver)
    : mpMesh(NULL),
      mpHeartGeometryInformation(NULL),
      mpZeroStimulus(new ZeroStimulus),
      mpSolver(pSolver)
{
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::~AbstractCardiacCellFactory()
{
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::SetMesh(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh)
{
    mpMesh = pMesh;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::GetMesh()
{
    if (mpMesh == NULL)
    {
        EXCEPTION("The mesh object has not been set in the cell factory");
    }
    return mpMesh;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::SetHeartGeometryInformation(HeartGeometryInformation<SPACE_DIM>* pHeartGeometryInformation)
{
    mpHeartGeometryInformation = pHeartGeometryInformation;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
HeartGeometryInformation<SPACE_DIM>* AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>::GetHeartGeometryInformation()
{
    if (mpHeartGeometryInformation == NULL)
    {
        EXCEPTION("HeartGeometryInformation object has not been set in the cell factory");
    }
    return mpHeartGeometryInformation;
}
// Explicit instantiation

template class AbstractCardiacCellFactory<1,1>;
template class AbstractCardiacCellFactory<1,2>;
template class AbstractCardiacCellFactory<1,3>;
template class AbstractCardiacCellFactory<2,2>;
template class AbstractCardiacCellFactory<3,3>;