SloughingCellKiller.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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This file is part of Chaste.

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modification, are permitted provided that the following conditions are met:
 * Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above copyright notice,
   this list of conditions and the following disclaimer in the documentation
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   contributors may be used to endorse or promote products derived from this
   software without specific prior written permission.

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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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*/

#ifndef SLOUGHINGCELLKILLER_HPP_
#define SLOUGHINGCELLKILLER_HPP_

#include "AbstractCellKiller.hpp"

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

template<unsigned DIM>
class SloughingCellKiller : public AbstractCellKiller<DIM>
{
private:

    bool mSloughSides;

    double mSloughHeight;

    double mSloughWidth;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellKiller<DIM> >(*this);
    }

public:

    SloughingCellKiller(AbstractCellPopulation<DIM>* pCrypt, double sloughHeight, bool sloughSides=false, double sloughWidth = 10.0);

    bool GetSloughSides() const;

    double GetSloughHeight() const;

    double GetSloughWidth() const;

    virtual void CheckAndLabelCellsForApoptosisOrDeath();

    void OutputCellKillerParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(SloughingCellKiller)

namespace boost
{
namespace serialization
{
template<class Archive, unsigned DIM>
inline void save_construct_data(
    Archive & ar, const SloughingCellKiller<DIM> * t, const BOOST_PFTO unsigned int file_version)
{
    // Save data required to construct instance
    const AbstractCellPopulation<DIM>* const p_crypt = t->GetCellPopulation();
    ar << p_crypt;
    bool slough_sides = t->GetSloughSides();
    ar << slough_sides;
    double slough_height = t->GetSloughHeight();
    ar << slough_height;
    double slough_width = t->GetSloughWidth();
    ar << slough_width;
}

template<class Archive, unsigned DIM>
inline void load_construct_data(
    Archive & ar, SloughingCellKiller<DIM> * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    AbstractCellPopulation<DIM>* p_crypt;
    ar >> p_crypt;
    bool slough_sides;
    ar >> slough_sides;
    double slough_height;
    ar >> slough_height;
    double slough_width;
    ar >> slough_width;

    // Invoke inplace constructor to initialise instance
    ::new(t)SloughingCellKiller<DIM>(p_crypt, slough_height, slough_sides, slough_width);
}
}
} // namespace ...

#endif /*SLOUGHINGCELLKILLER_HPP_*/