Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 // Must be included before any other serialization headers 00037 #include <boost/archive/text_oarchive.hpp> 00038 #include <boost/archive/text_iarchive.hpp> 00039 00040 #include <sstream> 00041 #include <iostream> 00042 00043 #include "ArchiveOpener.hpp" 00044 #include "ArchiveLocationInfo.hpp" 00045 #include "ProcessSpecificArchive.hpp" 00046 #include "Exception.hpp" 00047 #include "OutputFileHandler.hpp" 00048 00055 template<> 00056 ArchiveOpener<boost::archive::text_iarchive, std::ifstream>::ArchiveOpener( 00057 const FileFinder& rDirectory, 00058 const std::string& rFileNameBase, 00059 unsigned procId) 00060 : mpCommonStream(NULL), 00061 mpPrivateStream(NULL), 00062 mpCommonArchive(NULL), 00063 mpPrivateArchive(NULL) 00064 { 00065 // Figure out where things live 00066 ArchiveLocationInfo::SetArchiveDirectory(rDirectory); 00067 std::string private_path = ArchiveLocationInfo::GetProcessUniqueFilePath(rFileNameBase, procId); 00068 std::stringstream common_path; 00069 common_path << ArchiveLocationInfo::GetArchiveDirectory() << rFileNameBase; 00070 00071 // Try to open the main archive for replicated data 00072 mpCommonStream = new std::ifstream(common_path.str().c_str(), std::ios::binary); 00073 if (!mpCommonStream->is_open()) 00074 { 00075 delete mpCommonStream; 00076 EXCEPTION("Cannot load main archive file: " + common_path.str()); 00077 } 00078 00079 try 00080 { 00081 mpCommonArchive = new boost::archive::text_iarchive(*mpCommonStream); 00082 } 00083 catch (boost::archive::archive_exception& boost_exception) 00084 { 00085 if (boost_exception.code == boost::archive::archive_exception::unsupported_version) 00086 { 00087 // This is forward compatibility issue. We can't open the archive because it's been written by a more recent Boost. 00088 delete mpCommonArchive; 00089 delete mpCommonStream; 00090 EXCEPTION("Could not open Boost archive '" + common_path.str() + "' because it was written by a more recent Boost. Check process-specific archives too"); 00091 } 00092 else 00093 { 00094 // We don't understand the exception, so we shouldn't continue 00095 #define COVERAGE_IGNORE 00096 throw boost_exception; 00097 #undef COVERAGE_IGNORE 00098 } 00099 } 00100 00101 // Try to open the secondary archive for distributed data 00102 mpPrivateStream = new std::ifstream(private_path.c_str(), std::ios::binary); 00103 if (!mpPrivateStream->is_open()) 00104 { 00105 delete mpPrivateStream; 00106 delete mpCommonArchive; 00107 delete mpCommonStream; 00108 EXCEPTION("Cannot load secondary archive file: " + private_path); 00109 } 00110 mpPrivateArchive = new boost::archive::text_iarchive(*mpPrivateStream); 00111 ProcessSpecificArchive<boost::archive::text_iarchive>::Set(mpPrivateArchive); 00112 } 00113 00114 template<> 00115 ArchiveOpener<boost::archive::text_iarchive, std::ifstream>::~ArchiveOpener() 00116 { 00117 ProcessSpecificArchive<boost::archive::text_iarchive>::Set(NULL); 00118 delete mpPrivateArchive; 00119 delete mpPrivateStream; 00120 delete mpCommonArchive; 00121 delete mpCommonStream; 00122 } 00123 00130 template<> 00131 ArchiveOpener<boost::archive::text_oarchive, std::ofstream>::ArchiveOpener( 00132 const FileFinder& rDirectory, 00133 const std::string& rFileNameBase, 00134 unsigned procId) 00135 : mpCommonStream(NULL), 00136 mpPrivateStream(NULL), 00137 mpCommonArchive(NULL), 00138 mpPrivateArchive(NULL) 00139 { 00140 // Check for user error 00141 if (procId != PetscTools::GetMyRank()) 00142 { 00143 EXCEPTION("Specifying the secondary archive file ID doesn't make sense when writing."); 00144 } 00145 00146 // Figure out where things live 00147 ArchiveLocationInfo::SetArchiveDirectory(rDirectory); 00148 if (ArchiveLocationInfo::GetIsDirRelativeToChasteTestOutput()) 00149 { 00150 // Ensure the directory exists 00151 OutputFileHandler handler(ArchiveLocationInfo::GetArchiveRelativePath(), false); 00152 } 00153 std::string private_path = ArchiveLocationInfo::GetProcessUniqueFilePath(rFileNameBase); 00154 std::stringstream common_path; 00155 common_path << ArchiveLocationInfo::GetArchiveDirectory() << rFileNameBase; 00156 00157 // Create master archive for replicated data 00158 if (PetscTools::AmMaster()) 00159 { 00160 mpCommonStream = new std::ofstream(common_path.str().c_str()); 00161 if (!mpCommonStream->is_open()) 00162 { 00163 delete mpCommonStream; 00164 EXCEPTION("Failed to open main archive file for writing: " + common_path.str()); 00165 } 00166 } 00167 else 00168 { 00169 // Non-master processes need to go through the serialization methods, but not write any data 00170 mpCommonStream = new std::ofstream("/dev/null"); 00171 #define COVERAGE_IGNORE 00172 if (!mpCommonStream->is_open()) 00173 { 00174 delete mpCommonStream; 00175 EXCEPTION("Failed to open dummy archive file '/dev/null' for writing"); 00176 } 00177 #undef COVERAGE_IGNORE 00178 } 00179 mpCommonArchive = new boost::archive::text_oarchive(*mpCommonStream); 00180 00181 // Create secondary archive for distributed data 00182 mpPrivateStream = new std::ofstream(private_path.c_str()); 00183 if (!mpPrivateStream->is_open()) 00184 { 00185 delete mpPrivateStream; 00186 delete mpCommonArchive; 00187 delete mpCommonStream; 00188 EXCEPTION("Failed to open secondary archive file for writing: " + private_path); 00189 } 00190 mpPrivateArchive = new boost::archive::text_oarchive(*mpPrivateStream); 00191 ProcessSpecificArchive<boost::archive::text_oarchive>::Set(mpPrivateArchive); 00192 } 00193 00194 template<> 00195 ArchiveOpener<boost::archive::text_oarchive, std::ofstream>::~ArchiveOpener() 00196 { 00197 ProcessSpecificArchive<boost::archive::text_oarchive>::Set(NULL); 00198 delete mpPrivateArchive; 00199 delete mpPrivateStream; 00200 delete mpCommonArchive; 00201 delete mpCommonStream; 00202 00203 /* In a parallel setting, make sure all processes have finished writing before 00204 * continuing, to avoid nasty race conditions. 00205 * For example, many tests will write an archive then immediately read it back 00206 * in, which could easily break without this. 00207 */ 00208 PetscTools::Barrier("~ArchiveOpener"); 00209 }