Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #include "AbstractUntemplatedParameterisedSystem.hpp" 00037 00038 00039 #include "Exception.hpp" 00040 #include "VectorHelperFunctions.hpp" 00041 00042 00043 AbstractUntemplatedParameterisedSystem::AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) 00044 : mNumberOfStateVariables(numberOfStateVariables) 00045 { 00046 } 00047 00048 AbstractUntemplatedParameterisedSystem::~AbstractUntemplatedParameterisedSystem() 00049 { 00050 } 00051 00052 boost::shared_ptr<const AbstractOdeSystemInformation> AbstractUntemplatedParameterisedSystem::GetSystemInformation() const 00053 { 00054 assert(mpSystemInfo); 00055 return mpSystemInfo; 00056 } 00057 00058 00059 std::string AbstractUntemplatedParameterisedSystem::GetSystemName() const 00060 { 00061 return GetSystemInformation()->GetSystemName(); 00062 } 00063 00064 // 00065 // State variable methods 00066 // 00067 00068 unsigned AbstractUntemplatedParameterisedSystem::GetNumberOfStateVariables() const 00069 { 00070 return mNumberOfStateVariables; 00071 } 00072 00073 const std::vector<std::string>& AbstractUntemplatedParameterisedSystem::rGetStateVariableNames() const 00074 { 00075 return GetSystemInformation()->rGetStateVariableNames(); 00076 } 00077 00078 const std::vector<std::string>& AbstractUntemplatedParameterisedSystem::rGetStateVariableUnits() const 00079 { 00080 return GetSystemInformation()->rGetStateVariableUnits(); 00081 } 00082 00083 unsigned AbstractUntemplatedParameterisedSystem::GetStateVariableIndex(const std::string& rName) const 00084 { 00085 return GetSystemInformation()->GetStateVariableIndex(rName); 00086 } 00087 00088 bool AbstractUntemplatedParameterisedSystem::HasStateVariable(const std::string& rName) const 00089 { 00090 return GetSystemInformation()->HasStateVariable(rName); 00091 } 00092 00093 std::string AbstractUntemplatedParameterisedSystem::GetStateVariableUnits(unsigned index) const 00094 { 00095 return GetSystemInformation()->GetStateVariableUnits(index); 00096 } 00097 00098 // 00099 // Parameter methods 00100 // 00101 00102 unsigned AbstractUntemplatedParameterisedSystem::GetNumberOfParameters() const 00103 { 00104 return GetSystemInformation()->rGetParameterNames().size(); 00105 } 00106 00107 const std::vector<std::string>& AbstractUntemplatedParameterisedSystem::rGetParameterNames() const 00108 { 00109 return GetSystemInformation()->rGetParameterNames(); 00110 } 00111 00112 const std::vector<std::string>& AbstractUntemplatedParameterisedSystem::rGetParameterUnits() const 00113 { 00114 return GetSystemInformation()->rGetParameterUnits(); 00115 } 00116 00117 unsigned AbstractUntemplatedParameterisedSystem::GetParameterIndex(const std::string& rName) const 00118 { 00119 return GetSystemInformation()->GetParameterIndex(rName); 00120 } 00121 00122 bool AbstractUntemplatedParameterisedSystem::HasParameter(const std::string& rName) const 00123 { 00124 return GetSystemInformation()->HasParameter(rName); 00125 } 00126 00127 std::string AbstractUntemplatedParameterisedSystem::GetParameterUnits(unsigned index) const 00128 { 00129 return GetSystemInformation()->GetParameterUnits(index); 00130 } 00131 00132 // 00133 // "Any variable" methods 00134 // 00135 00136 unsigned AbstractUntemplatedParameterisedSystem::GetAnyVariableIndex(const std::string& rName) const 00137 { 00138 return GetSystemInformation()->GetAnyVariableIndex(rName); 00139 } 00140 00141 bool AbstractUntemplatedParameterisedSystem::HasAnyVariable(const std::string& rName) const 00142 { 00143 return GetSystemInformation()->HasAnyVariable(rName); 00144 } 00145 00146 std::string AbstractUntemplatedParameterisedSystem::GetAnyVariableUnits(unsigned index) const 00147 { 00148 return GetSystemInformation()->GetAnyVariableUnits(index); 00149 } 00150 00151 std::string AbstractUntemplatedParameterisedSystem::GetAnyVariableUnits(const std::string& rName) const 00152 { 00153 return GetAnyVariableUnits(GetAnyVariableIndex(rName)); 00154 } 00155 00156 // 00157 // "Derived quantities" methods 00158 // 00159 00160 unsigned AbstractUntemplatedParameterisedSystem::GetNumberOfDerivedQuantities() const 00161 { 00162 return GetSystemInformation()->rGetDerivedQuantityNames().size(); 00163 } 00164 00165 const std::vector<std::string>& AbstractUntemplatedParameterisedSystem::rGetDerivedQuantityNames() const 00166 { 00167 return GetSystemInformation()->rGetDerivedQuantityNames(); 00168 } 00169 00170 const std::vector<std::string>& AbstractUntemplatedParameterisedSystem::rGetDerivedQuantityUnits() const 00171 { 00172 return GetSystemInformation()->rGetDerivedQuantityUnits(); 00173 } 00174 00175 unsigned AbstractUntemplatedParameterisedSystem::GetDerivedQuantityIndex(const std::string& rName) const 00176 { 00177 return GetSystemInformation()->GetDerivedQuantityIndex(rName); 00178 } 00179 00180 bool AbstractUntemplatedParameterisedSystem::HasDerivedQuantity(const std::string& rName) const 00181 { 00182 return GetSystemInformation()->HasDerivedQuantity(rName); 00183 } 00184 00185 std::string AbstractUntemplatedParameterisedSystem::GetDerivedQuantityUnits(unsigned index) const 00186 { 00187 return GetSystemInformation()->GetDerivedQuantityUnits(index); 00188 } 00189 00190 00191 unsigned AbstractUntemplatedParameterisedSystem::GetNumberOfAttributes() const 00192 { 00193 return GetSystemInformation()->GetNumberOfAttributes(); 00194 } 00195 00196 bool AbstractUntemplatedParameterisedSystem::HasAttribute(const std::string& rName) const 00197 { 00198 return GetSystemInformation()->HasAttribute(rName); 00199 } 00200 00201 double AbstractUntemplatedParameterisedSystem::GetAttribute(const std::string& rName) const 00202 { 00203 return GetSystemInformation()->GetAttribute(rName); 00204 }