Chaste Release::3.1
OdeLinearSystemSolver.cpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
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00010 This file is part of Chaste.
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00034 */
00035 
00036 #include "OdeLinearSystemSolver.hpp"
00037 #include "PetscTools.hpp"
00038 #include "ReplicatableVector.hpp"
00039 
00040 OdeLinearSystemSolver::OdeLinearSystemSolver(unsigned systemSize, double timeStep)
00041     : mLinearSystem(systemSize)
00042 {
00043     assert(timeStep > 0.0);
00044     mTimeStep = timeStep;
00045 
00046     // Initialise vectors to zero
00047     mCurrentSolution = PetscTools::CreateAndSetVec(systemSize, 0.0);
00048     mForceVector = PetscTools::CreateAndSetVec(systemSize, 0.0);
00049 }
00050 
00051 OdeLinearSystemSolver::~OdeLinearSystemSolver()
00052 {
00053     PetscTools::Destroy(mCurrentSolution);
00054     PetscTools::Destroy(mForceVector);
00055 }
00056 
00057 double OdeLinearSystemSolver::GetTimeStep()
00058 {
00059     return mTimeStep;
00060 }
00061 
00062 Mat& OdeLinearSystemSolver::rGetLhsMatrix()
00063 {
00064     return mLinearSystem.rGetLhsMatrix();
00065 }
00066 
00067 Vec& OdeLinearSystemSolver::rGetForceVector()
00068 {
00069     return mForceVector;
00070 }
00071 
00072 void OdeLinearSystemSolver::SetInitialConditionVector(Vec initialConditionsVector)
00073 {
00074     VecCopy(initialConditionsVector, mCurrentSolution);
00075 }
00076 
00077 Vec OdeLinearSystemSolver::SolveOneTimeStep()
00078 {
00079     // Compute the product of the LHS matrix and the current solution vector,
00080     // setting the answer to be the RHS vector
00081     MatMult(mLinearSystem.rGetLhsMatrix(), mCurrentSolution, mLinearSystem.rGetRhsVector());
00082 
00083     // Add timestep multipled by force vector
00084     PetscVecTools::AddScaledVector(mLinearSystem.rGetRhsVector(), mForceVector, mTimeStep);
00085 
00086     // avoid memory leaks
00087     PetscTools::Destroy(mCurrentSolution);
00088 
00089     // Having constructed the RHS vector, solve the resulting linear system...
00090     mCurrentSolution = mLinearSystem.Solve();
00091 
00092     return mCurrentSolution;
00093 }