Chaste Release::3.1
DiffusionForce.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
00018    and/or other materials provided with the distribution.
00019  * Neither the name of the University of Oxford nor the names of its
00020    contributors may be used to endorse or promote products derived from this
00021    software without specific prior written permission.
00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #ifndef DIFFUSIONFORCE_HPP_
00037 #define DIFFUSIONFORCE_HPP_
00038 
00039 #include "ChasteSerialization.hpp"
00040 #include <boost/serialization/base_object.hpp>
00041 
00042 #include "AbstractForce.hpp"
00043 #include "AbstractOffLatticeCellPopulation.hpp"
00044 #include "RandomNumberGenerator.hpp"
00045 
00049 template<unsigned DIM>
00050 class DiffusionForce : public AbstractForce<DIM>
00051 {
00052 private :
00053 
00057     double mDiffusionConstant;
00058 
00062     double mAbsoluteTemperature;
00063 
00069     double mViscosity;
00070 
00074     double mMechanicsCutOffLength;
00075 
00079     friend class boost::serialization::access;
00080     template<class Archive>
00081     void serialize(Archive & archive, const unsigned int version)
00082     {
00083         archive & boost::serialization::base_object<AbstractForce<DIM> >(*this);
00084         archive & mDiffusionConstant;
00085         archive & mAbsoluteTemperature;
00086         archive & mViscosity;
00087         archive & mMechanicsCutOffLength;
00088     }
00089 
00090 public :
00091 
00095     DiffusionForce();
00096 
00100     ~DiffusionForce();
00101 
00107     void SetDiffusionConstant(double diffusionConstant);
00108 
00115     void SetAbsoluteTemperature(double absoluteTemperature);
00116 
00123     void SetViscosity(double viscosity);
00124 
00131     void SetCutOffLength(double cutOffLength);
00132 
00138     double GetDiffusionConstant();
00139 
00145     double GetAbsoluteTemperature();
00146 
00152     double GetViscosity();
00153 
00159     double GetCutOffLength();
00160 
00168     void AddForceContribution(std::vector<c_vector<double, DIM> >& rForces,
00169             AbstractCellPopulation<DIM>& rCellPopulation);
00170 
00176     void OutputForceParameters(out_stream& rParamsFile);
00177 };
00178 
00179 #include "SerializationExportWrapper.hpp"
00180 EXPORT_TEMPLATE_CLASS_SAME_DIMS(DiffusionForce)
00181 
00182 #endif /*DIFFUSIONFORCE_HPP_*/