Chaste Release::3.1
ColumnDataReader.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #ifndef _COLUMNDATAREADER_HPP_
00037 #define _COLUMNDATAREADER_HPP_
00038 
00039 #include "AbstractDataReader.hpp"
00040 
00041 #include <string>
00042 #include <vector>
00043 #include <map>
00044 
00045 #include "FileFinder.hpp"
00046 
00050 class ColumnDataReader : public AbstractDataReader
00051 {
00052 private:
00053 
00054     std::map<std::string, int> mVariablesToColumns;       
00055     std::map<std::string, std::string> mVariablesToUnits; 
00056     int mNumFixedDimensions;                              
00057     bool mHasUnlimitedDimension;                          
00058     int mNumVariables;                                    
00059     std::string mInfoFilename;                            
00060     std::string mDataFilename;                            
00061     std::string mAncillaryFilename;                       
00062     std::vector<double> mValues;                          
00063     unsigned mFieldWidth;                                 
00064     static const int SPACING = 2;                         
00072     void PushColumnEntryFromLine(const std::string& rLine, int col);
00073 
00080     void ReadColumnFromFile(const std::string& rFilename, int col);
00081 
00089     void ReadValueFromFile(const std::string& rFilename, int col, int row);
00090 
00098     void CheckFiles(const std::string& rDirectory, const std::string& rBaseName);
00099 
00100 public:
00101 
00119     ColumnDataReader(const std::string& rDirectory,
00120                      const std::string& rBaseName,
00121                      bool makeAbsolute=true);
00122 
00130     ColumnDataReader(const FileFinder& rDirectory,
00131                      const std::string& rBaseName);
00132 
00138     std::vector<double> GetValues(const std::string& rVariableName);
00139 
00146     std::vector<double> GetValues(const std::string& rVariableName, int fixedDimension);
00147 
00151     std::vector<double> GetUnlimitedDimensionValues();
00152 
00158     bool HasValues(const std::string& rVariableName);
00159 
00163     unsigned GetFieldWidth();
00164 };
00165 
00166 #endif //_COLUMNDATAREADER_HPP_