DeltaNotchOffLatticeSimulation.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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This file is part of Chaste.

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 * Redistributions of source code must retain the above copyright notice,
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 * Redistributions in binary form must reproduce the above copyright notice,
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*/

#ifndef DELTANOTCHOFFLATTICESIMULATION_HPP_
#define DELTANOTCHOFFLATTICESIMULATION_HPP_

#include <map>
#include "ChasteSerialization.hpp"
#include "OffLatticeSimulation.hpp"
#include "PetscTools.hpp"

template<unsigned DIM>
class DeltaNotchOffLatticeSimulation : public OffLatticeSimulation<DIM>
{
private :

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<OffLatticeSimulation<DIM> >(*this);
    }

    void SetupSolve();

    void UpdateAtEndOfTimeStep();

    void UpdateCellData();

public:

    out_stream mVizDeltaFile;

     DeltaNotchOffLatticeSimulation(AbstractCellPopulation<DIM>& rCellPopulation,
                                   bool deleteCellPopulationInDestructor=false,
                                   bool initialiseCells=true);

    ~DeltaNotchOffLatticeSimulation();
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(DeltaNotchOffLatticeSimulation)

namespace boost
{
namespace serialization
{
template<class Archive, unsigned DIM>
inline void save_construct_data(
    Archive & ar, const DeltaNotchOffLatticeSimulation<DIM> * t, const BOOST_PFTO unsigned int file_version)
{
    const AbstractCellPopulation<DIM> * p_cell_population = &(t->rGetCellPopulation());
    ar & p_cell_population;
}

template<class Archive, unsigned DIM>
inline void load_construct_data(
    Archive & ar, DeltaNotchOffLatticeSimulation<DIM> * t, const unsigned int file_version)
{
    AbstractCellPopulation<DIM>* p_cell_population;
    ar >> p_cell_population;

    ::new(t)DeltaNotchOffLatticeSimulation<DIM>(*p_cell_population, true, false);
}
}
} // namespace ...

#endif /*DELTANOTCHOFFLATTICESIMULATION_HPP_*/