CellwiseSourcePde.cpp

/*

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*/

#include "CellwiseSourcePde.hpp"
#include "ApoptoticCellProperty.hpp"
#include "Exception.hpp"

template<unsigned DIM>
CellwiseSourcePde<DIM>::CellwiseSourcePde(MeshBasedCellPopulation<DIM>& rCellPopulation, double coefficient)
    : mrCellPopulation(rCellPopulation),
      mCoefficient(coefficient)
{
}

template<unsigned DIM>
const MeshBasedCellPopulation<DIM>& CellwiseSourcePde<DIM>::rGetCellPopulation() const
{
    return mrCellPopulation;
}

template<unsigned DIM>
double CellwiseSourcePde<DIM>::GetCoefficient() const
{
    return mCoefficient;
}

template<unsigned DIM>
double CellwiseSourcePde<DIM>::ComputeConstantInUSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement)
{
    return 0.0;
}

template<unsigned DIM>
double CellwiseSourcePde<DIM>::ComputeLinearInUCoeffInSourceTerm(const ChastePoint<DIM>& rX, Element<DIM,DIM>* pElement)
{
    NEVER_REACHED;
    return 0.0;
}

template<unsigned DIM>
double CellwiseSourcePde<DIM>::ComputeLinearInUCoeffInSourceTermAtNode(const Node<DIM>& rNode)
{
    double coefficient = 0.0;

    CellPtr p_cell = mrCellPopulation.GetCellUsingLocationIndex(rNode.GetIndex());

    bool cell_is_apoptotic = p_cell->HasCellProperty<ApoptoticCellProperty>();

    if (!cell_is_apoptotic)
    {
        coefficient = mCoefficient;
    }

    return coefficient;
}

template<unsigned DIM>
c_matrix<double,DIM,DIM> CellwiseSourcePde<DIM>::ComputeDiffusionTerm(const ChastePoint<DIM>& rX)
{
    return identity_matrix<double>(DIM);
}

// Explicit instantiation

template class CellwiseSourcePde<1>;
template class CellwiseSourcePde<2>;
template class CellwiseSourcePde<3>;

// Serialization for Boost >= 1.36
#include "SerializationExportWrapperForCpp.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(CellwiseSourcePde)