Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 00037 #ifndef _ABSTRACTTETRAHEDRALMESHWRITER_HPP_ 00038 #define _ABSTRACTTETRAHEDRALMESHWRITER_HPP_ 00039 00040 // Forward declaration prevents circular include chain 00041 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00042 class AbstractTetrahedralMesh; 00043 00044 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00045 class DistributedTetrahedralMesh; 00046 00047 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00048 class MixedDimensionMesh; 00049 00050 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00051 struct MeshWriterIterators; 00052 00053 #include <fstream> 00054 #include <sstream> 00055 #include <iostream> 00056 00057 #include "AbstractMeshWriter.hpp" 00058 #include "AbstractMesh.hpp" 00059 #include "NodeMap.hpp" 00060 00064 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00065 class AbstractTetrahedralMeshWriter : public AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM> 00066 { 00067 private: 00068 00075 virtual void WriteFilesUsingParallelMesh(bool keepOriginalElementIndexing=true); 00076 00084 void WriteNclFile(AbstractTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>& rMesh, 00085 bool invertMeshPermutation=false); 00086 00090 virtual void CreateFilesWithHeaders(); 00091 00095 virtual void AppendLocalDataToFiles(); 00096 00100 virtual void WriteFilesFooter(); 00101 00102 AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* mpMesh; 00104 NodeMap* mpNodeMap; 00106 protected: 00107 00108 unsigned mNodesPerElement; 00109 unsigned mNodesPerBoundaryElement; 00111 DistributedTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* mpDistributedMesh; 00112 MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* mpMixedMesh; 00113 MeshWriterIterators<ELEMENT_DIM,SPACE_DIM>* mpIters; 00115 bool mIndexFromZero; 00116 bool mWriteMetaFile; 00117 unsigned mNodeCounterForParallelMesh; 00118 unsigned mElementCounterForParallelMesh; 00119 unsigned mBoundaryElementCounterForParallelMesh; 00120 unsigned mCableElementCounterForParallelMesh; 00121 bool mFilesAreBinary; 00123 public: 00124 00132 AbstractTetrahedralMeshWriter(const std::string& rDirectory, 00133 const std::string& rBaseName, 00134 const bool clearOutputDir=true); 00135 00139 virtual ~AbstractTetrahedralMeshWriter(); 00140 00150 virtual void WriteFilesUsingMesh(AbstractTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>& rMesh, 00151 bool keepOriginalElementIndexing=true); 00152 00162 void WriteFilesUsingMeshReaderAndMesh(AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>& rMeshReader, 00163 AbstractTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>& rMesh); 00164 00168 std::vector<double> GetNextNode(); 00169 00170 00174 ElementData GetNextElement(); 00175 00179 ElementData GetNextBoundaryElement(); 00180 00184 ElementData GetNextCableElement(); 00185 }; 00186 00187 #endif //_ABSTRACTTETRAHEDRALMESHWRITER_HPP_