Chaste Release::3.1
AbstractTetrahedralMeshWriter.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
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00015    this list of conditions and the following disclaimer.
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00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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00034 */
00035 
00036 
00037 #ifndef _ABSTRACTTETRAHEDRALMESHWRITER_HPP_
00038 #define _ABSTRACTTETRAHEDRALMESHWRITER_HPP_
00039 
00040 // Forward declaration prevents circular include chain
00041 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00042 class AbstractTetrahedralMesh;
00043 
00044 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00045 class DistributedTetrahedralMesh;
00046 
00047 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00048 class MixedDimensionMesh;
00049 
00050 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00051 struct MeshWriterIterators;
00052 
00053 #include <fstream>
00054 #include <sstream>
00055 #include <iostream>
00056 
00057 #include "AbstractMeshWriter.hpp"
00058 #include "AbstractMesh.hpp"
00059 #include "NodeMap.hpp"
00060 
00064 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00065 class AbstractTetrahedralMeshWriter : public AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>
00066 {
00067 private:
00068 
00075     virtual void WriteFilesUsingParallelMesh(bool keepOriginalElementIndexing=true);
00076 
00084     void WriteNclFile(AbstractTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>& rMesh,
00085                       bool invertMeshPermutation=false);
00086 
00090     virtual void CreateFilesWithHeaders();
00091 
00095     virtual void AppendLocalDataToFiles();
00096 
00100     virtual void WriteFilesFooter();
00101 
00102     AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* mpMesh; 
00104     NodeMap* mpNodeMap; 
00106 protected:
00107 
00108     unsigned mNodesPerElement; 
00109     unsigned mNodesPerBoundaryElement; 
00111     DistributedTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* mpDistributedMesh; 
00112     MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* mpMixedMesh; 
00113     MeshWriterIterators<ELEMENT_DIM,SPACE_DIM>* mpIters; 
00115     bool mIndexFromZero; 
00116     bool mWriteMetaFile; 
00117     unsigned mNodeCounterForParallelMesh; 
00118     unsigned mElementCounterForParallelMesh;
00119     unsigned mBoundaryElementCounterForParallelMesh;
00120     unsigned mCableElementCounterForParallelMesh;
00121     bool mFilesAreBinary;  
00123 public:
00124 
00132     AbstractTetrahedralMeshWriter(const std::string& rDirectory,
00133                        const std::string& rBaseName,
00134                        const bool clearOutputDir=true);
00135 
00139     virtual ~AbstractTetrahedralMeshWriter();
00140 
00150     virtual void WriteFilesUsingMesh(AbstractTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>& rMesh,
00151                                      bool keepOriginalElementIndexing=true);
00152 
00162     void WriteFilesUsingMeshReaderAndMesh(AbstractMeshReader<ELEMENT_DIM, SPACE_DIM>& rMeshReader,
00163                                           AbstractTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>& rMesh);
00164 
00168     std::vector<double> GetNextNode();
00169 
00170 
00174     ElementData GetNextElement();
00175 
00179     ElementData GetNextBoundaryElement();
00180 
00184     ElementData GetNextCableElement();
00185 };
00186 
00187 #endif //_ABSTRACTTETRAHEDRALMESHWRITER_HPP_