NagaiHondaForce.hpp

/*

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*/

#ifndef NAGAIHONDAFORCE_HPP_
#define NAGAIHONDAFORCE_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractForce.hpp"
#include "VertexBasedCellPopulation.hpp"

#include <iostream>

template<unsigned DIM>
class NagaiHondaForce  : public AbstractForce<DIM>
{
friend class TestForces;

private:

    double mNagaiHondaDeformationEnergyParameter;

    double mNagaiHondaMembraneSurfaceEnergyParameter;

    double mNagaiHondaCellCellAdhesionEnergyParameter;

    double mNagaiHondaCellBoundaryAdhesionEnergyParameter;

    double mMatureCellTargetArea;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractForce<DIM> >(*this);
        archive & mNagaiHondaDeformationEnergyParameter;
        archive & mNagaiHondaMembraneSurfaceEnergyParameter;
        archive & mNagaiHondaCellCellAdhesionEnergyParameter;
        archive & mNagaiHondaCellBoundaryAdhesionEnergyParameter;
        archive & mMatureCellTargetArea;
    }

public:

    NagaiHondaForce();

    virtual ~NagaiHondaForce();

    void AddForceContribution(std::vector<c_vector<double, DIM> >& rForces, AbstractCellPopulation<DIM>& rCellPopulation);

    virtual double GetAdhesionParameter(Node<DIM>* pNodeA, Node<DIM>* pNodeB, VertexBasedCellPopulation<DIM>& rVertexCellPopulation);

    double GetNagaiHondaDeformationEnergyParameter();

    double GetNagaiHondaMembraneSurfaceEnergyParameter();

    double GetNagaiHondaCellCellAdhesionEnergyParameter();

    double GetNagaiHondaCellBoundaryAdhesionEnergyParameter();

    void SetNagaiHondaDeformationEnergyParameter(double nagaiHondaDeformationEnergyParameter);

    void SetNagaiHondaMembraneSurfaceEnergyParameter(double nagaiHondaMembraneSurfaceEnergyParameter);

    void SetNagaiHondaCellCellAdhesionEnergyParameter(double nagaiHondaCellCellAdhesionEnergyEnergyParameter);

    void SetNagaiHondaCellBoundaryAdhesionEnergyParameter(double nagaiHondaCellBoundaryAdhesionEnergyParameter);

    double GetTargetAreaOfCell(const CellPtr pCell) const;

    double GetMatureCellTargetArea() const;

    void SetMatureCellTargetArea(double matureCellTargetArea);

    void OutputForceParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(NagaiHondaForce)

#endif /*NAGAIHONDAFORCE_HPP_*/