Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 00037 #ifndef OPERATORSPLITTINGMONODOMAINSOLVER_HPP_ 00038 #define OPERATORSPLITTINGMONODOMAINSOLVER_HPP_ 00039 00040 00041 #include "MonodomainTissue.hpp" 00042 #include "MonodomainAssembler.hpp" 00043 #include "AbstractDynamicLinearPdeSolver.hpp" 00044 #include "MassMatrixAssembler.hpp" 00045 #include "NaturalNeumannSurfaceTermAssembler.hpp" 00046 00071 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> 00072 class OperatorSplittingMonodomainSolver : public AbstractDynamicLinearPdeSolver<ELEMENT_DIM,SPACE_DIM,1> 00073 { 00074 private: 00075 00077 BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,1>* mpBoundaryConditions; 00078 00080 MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* mpMonodomainTissue; 00081 00083 MonodomainAssembler<ELEMENT_DIM,SPACE_DIM>* mpMonodomainAssembler; 00084 00086 NaturalNeumannSurfaceTermAssembler<ELEMENT_DIM,SPACE_DIM,1>* mpNeumannSurfaceTermsAssembler; 00087 00092 unsigned mNumQuadPoints; 00093 00095 Mat mMassMatrix; 00096 00104 Vec mVecForConstructingRhs; 00105 00114 void SetupLinearSystem(Vec currentSolution, bool computeMatrix); 00115 00120 void PrepareForSetupLinearSystem(Vec currentSolution); 00121 00126 void FollowingSolveLinearSystem(Vec currentSolution); 00127 00128 public: 00129 00135 void InitialiseForSolve(Vec initialSolution); 00136 00137 00146 OperatorSplittingMonodomainSolver(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh, 00147 MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* pTissue, 00148 BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,1>* pBoundaryConditions, 00149 unsigned numQuadPoints = 2); 00150 00154 ~OperatorSplittingMonodomainSolver(); 00155 }; 00156 00157 00158 00159 00160 #endif /* OPERATORSPLITTINGMONODOMAINSOLVER_HPP_ */