Chaste Release::3.1
PdeAndBoundaryConditions.cpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
00018    and/or other materials provided with the distribution.
00019  * Neither the name of the University of Oxford nor the names of its
00020    contributors may be used to endorse or promote products derived from this
00021    software without specific prior written permission.
00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #include "PdeAndBoundaryConditions.hpp"
00037 
00038 template<unsigned DIM>
00039 PdeAndBoundaryConditions<DIM>::PdeAndBoundaryConditions(AbstractLinearEllipticPde<DIM,DIM>* pPde,
00040                                                         AbstractBoundaryCondition<DIM>* pBoundaryCondition,
00041                                                         bool isNeumannBoundaryCondition,
00042                                                         Vec solution,
00043                                                         bool deleteMemberPointersInDestructor)
00044     : mpPde(pPde),
00045       mpBoundaryCondition(pBoundaryCondition),
00046       mIsNeumannBoundaryCondition(isNeumannBoundaryCondition),
00047       mSolution(NULL),
00048       mDeleteMemberPointersInDestructor(deleteMemberPointersInDestructor),
00049       mDependentVariableName("")
00050 {
00051     if (solution)
00052     {
00053         mSolution = solution;
00054     }
00055 }
00056 
00057 template<unsigned DIM>
00058 PdeAndBoundaryConditions<DIM>::~PdeAndBoundaryConditions()
00059 {
00060     // Avoid memory leaks if the object was loaded from an archive
00061     if (mDeleteMemberPointersInDestructor)
00062     {
00063         delete mpPde;
00064         delete mpBoundaryCondition;
00065     }
00066 
00067     DestroySolution();
00068 }
00069 
00070 template<unsigned DIM>
00071 AbstractLinearEllipticPde<DIM,DIM>* PdeAndBoundaryConditions<DIM>::GetPde()
00072 {
00073     return mpPde;
00074 }
00075 
00076 template<unsigned DIM>
00077 AbstractBoundaryCondition<DIM>* PdeAndBoundaryConditions<DIM>::GetBoundaryCondition() const
00078 {
00079     return mpBoundaryCondition;
00080 }
00081 
00082 template<unsigned DIM>
00083 Vec PdeAndBoundaryConditions<DIM>::GetSolution()
00084 {
00085     return mSolution;
00086 }
00087 
00088 template<unsigned DIM>
00089 Vec PdeAndBoundaryConditions<DIM>::GetSolution() const
00090 {
00091     return mSolution;
00092 }
00093 
00094 template<unsigned DIM>
00095 void PdeAndBoundaryConditions<DIM>::SetSolution(Vec solution)
00096 {
00097     mSolution = solution;
00098 }
00099 
00100 template<unsigned DIM>
00101 bool PdeAndBoundaryConditions<DIM>::IsNeumannBoundaryCondition()
00102 {
00103     return mIsNeumannBoundaryCondition;
00104 }
00105 
00106 template<unsigned DIM>
00107 bool PdeAndBoundaryConditions<DIM>::HasAveragedSourcePde()
00108 {
00109     return (dynamic_cast<AveragedSourcePde<DIM>*>(mpPde) != NULL);
00110 }
00111 
00112 template<unsigned DIM>
00113 void PdeAndBoundaryConditions<DIM>::DestroySolution()
00114 {
00115     if (mSolution)
00116     {
00117         PetscTools::Destroy(mSolution);
00118     }
00119 }
00120 
00121 template<unsigned DIM>
00122 void PdeAndBoundaryConditions<DIM>::SetUpSourceTermsForAveragedSourcePde(TetrahedralMesh<DIM,DIM>* pMesh, std::map< CellPtr, unsigned >* pCellPdeElementMap)
00123 {
00124     assert(HasAveragedSourcePde());
00125     static_cast<AveragedSourcePde<DIM>*>(mpPde)->SetupSourceTerms(*pMesh, pCellPdeElementMap);
00126 }
00127 
00128 template<unsigned DIM>
00129 void PdeAndBoundaryConditions<DIM>::SetDependentVariableName(const std::string& rName)
00130 {
00131     mDependentVariableName = rName;
00132 }
00133 
00134 template<unsigned DIM>
00135 std::string& PdeAndBoundaryConditions<DIM>::rGetDependentVariableName()
00136 {
00137     return mDependentVariableName;
00138 }
00140 // Explicit instantiation
00142 
00143 template class PdeAndBoundaryConditions<1>;
00144 template class PdeAndBoundaryConditions<2>;
00145 template class PdeAndBoundaryConditions<3>;
00146 
00147 // Serialization for Boost >= 1.36
00148 #include "SerializationExportWrapperForCpp.hpp"
00149 EXPORT_TEMPLATE_CLASS_SAME_DIMS(PdeAndBoundaryConditions)