Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #include "PdeAndBoundaryConditions.hpp" 00037 00038 template<unsigned DIM> 00039 PdeAndBoundaryConditions<DIM>::PdeAndBoundaryConditions(AbstractLinearEllipticPde<DIM,DIM>* pPde, 00040 AbstractBoundaryCondition<DIM>* pBoundaryCondition, 00041 bool isNeumannBoundaryCondition, 00042 Vec solution, 00043 bool deleteMemberPointersInDestructor) 00044 : mpPde(pPde), 00045 mpBoundaryCondition(pBoundaryCondition), 00046 mIsNeumannBoundaryCondition(isNeumannBoundaryCondition), 00047 mSolution(NULL), 00048 mDeleteMemberPointersInDestructor(deleteMemberPointersInDestructor), 00049 mDependentVariableName("") 00050 { 00051 if (solution) 00052 { 00053 mSolution = solution; 00054 } 00055 } 00056 00057 template<unsigned DIM> 00058 PdeAndBoundaryConditions<DIM>::~PdeAndBoundaryConditions() 00059 { 00060 // Avoid memory leaks if the object was loaded from an archive 00061 if (mDeleteMemberPointersInDestructor) 00062 { 00063 delete mpPde; 00064 delete mpBoundaryCondition; 00065 } 00066 00067 DestroySolution(); 00068 } 00069 00070 template<unsigned DIM> 00071 AbstractLinearEllipticPde<DIM,DIM>* PdeAndBoundaryConditions<DIM>::GetPde() 00072 { 00073 return mpPde; 00074 } 00075 00076 template<unsigned DIM> 00077 AbstractBoundaryCondition<DIM>* PdeAndBoundaryConditions<DIM>::GetBoundaryCondition() const 00078 { 00079 return mpBoundaryCondition; 00080 } 00081 00082 template<unsigned DIM> 00083 Vec PdeAndBoundaryConditions<DIM>::GetSolution() 00084 { 00085 return mSolution; 00086 } 00087 00088 template<unsigned DIM> 00089 Vec PdeAndBoundaryConditions<DIM>::GetSolution() const 00090 { 00091 return mSolution; 00092 } 00093 00094 template<unsigned DIM> 00095 void PdeAndBoundaryConditions<DIM>::SetSolution(Vec solution) 00096 { 00097 mSolution = solution; 00098 } 00099 00100 template<unsigned DIM> 00101 bool PdeAndBoundaryConditions<DIM>::IsNeumannBoundaryCondition() 00102 { 00103 return mIsNeumannBoundaryCondition; 00104 } 00105 00106 template<unsigned DIM> 00107 bool PdeAndBoundaryConditions<DIM>::HasAveragedSourcePde() 00108 { 00109 return (dynamic_cast<AveragedSourcePde<DIM>*>(mpPde) != NULL); 00110 } 00111 00112 template<unsigned DIM> 00113 void PdeAndBoundaryConditions<DIM>::DestroySolution() 00114 { 00115 if (mSolution) 00116 { 00117 PetscTools::Destroy(mSolution); 00118 } 00119 } 00120 00121 template<unsigned DIM> 00122 void PdeAndBoundaryConditions<DIM>::SetUpSourceTermsForAveragedSourcePde(TetrahedralMesh<DIM,DIM>* pMesh, std::map< CellPtr, unsigned >* pCellPdeElementMap) 00123 { 00124 assert(HasAveragedSourcePde()); 00125 static_cast<AveragedSourcePde<DIM>*>(mpPde)->SetupSourceTerms(*pMesh, pCellPdeElementMap); 00126 } 00127 00128 template<unsigned DIM> 00129 void PdeAndBoundaryConditions<DIM>::SetDependentVariableName(const std::string& rName) 00130 { 00131 mDependentVariableName = rName; 00132 } 00133 00134 template<unsigned DIM> 00135 std::string& PdeAndBoundaryConditions<DIM>::rGetDependentVariableName() 00136 { 00137 return mDependentVariableName; 00138 } 00140 // Explicit instantiation 00142 00143 template class PdeAndBoundaryConditions<1>; 00144 template class PdeAndBoundaryConditions<2>; 00145 template class PdeAndBoundaryConditions<3>; 00146 00147 // Serialization for Boost >= 1.36 00148 #include "SerializationExportWrapperForCpp.hpp" 00149 EXPORT_TEMPLATE_CLASS_SAME_DIMS(PdeAndBoundaryConditions)