AbstractOdeSystemInformation.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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 * Redistributions of source code must retain the above copyright notice,
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 * Redistributions in binary form must reproduce the above copyright notice,
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   contributors may be used to endorse or promote products derived from this
   software without specific prior written permission.

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*/


#ifndef _ABSTRACTODESYSTEMINFORMATION_HPP_
#define _ABSTRACTODESYSTEMINFORMATION_HPP_

#include <vector>
#include <string>
#include <map>

class AbstractOdeSystemInformation
{
    friend class TestAbstractOdeSystem;

protected:
    std::string mSystemName;

    std::string mFreeVariableName;

    std::string mFreeVariableUnits;

    std::vector<std::string> mVariableNames;

    std::vector<std::string> mVariableUnits;

    std::vector<std::string> mParameterNames;

    std::vector<std::string> mParameterUnits;

    std::vector<std::string> mDerivedQuantityNames;

    std::vector<std::string> mDerivedQuantityUnits;

    std::map<std::string, double> mAttributes;

    std::vector<double> mInitialConditions;

    bool mInitialised;

    virtual void Initialise()=0;

public:

    AbstractOdeSystemInformation();

    virtual ~AbstractOdeSystemInformation();

    std::string GetSystemName() const;

    std::string GetFreeVariableName() const;

    std::string GetFreeVariableUnits() const;

    void SetDefaultInitialConditions(const std::vector<double>& rInitialConditions);

    void SetDefaultInitialCondition(unsigned index, double initialCondition);

    std::vector<double> GetInitialConditions() const;

    const std::vector<std::string>& rGetStateVariableNames() const;

    const std::vector<std::string>& rGetStateVariableUnits() const;

    unsigned GetStateVariableIndex(const std::string& rName) const;

    bool HasStateVariable(const std::string& rName) const;

    std::string GetStateVariableUnits(unsigned index) const;

    const std::vector<std::string>& rGetParameterNames() const;

    const std::vector<std::string>& rGetParameterUnits() const;

    unsigned GetParameterIndex(const std::string& rName) const;

    bool HasParameter(const std::string& rName) const;

    std::string GetParameterUnits(unsigned index) const;

    unsigned GetNumberOfParameters() const;

    unsigned GetAnyVariableIndex(const std::string& rName) const;

    bool HasAnyVariable(const std::string& rName) const;

    std::string GetAnyVariableUnits(unsigned index) const;

    const std::vector<std::string>& rGetDerivedQuantityNames() const;

    const std::vector<std::string>& rGetDerivedQuantityUnits() const;

    unsigned GetDerivedQuantityIndex(const std::string& rName) const;

    bool HasDerivedQuantity(const std::string& rName) const;

    std::string GetDerivedQuantityUnits(unsigned index) const;

    unsigned GetNumberOfDerivedQuantities() const;

    //
    // Attribute methods
    //

    unsigned GetNumberOfAttributes() const;

    bool HasAttribute(const std::string& rName) const;

    double GetAttribute(const std::string& rName) const;

};


#endif /*_ABSTRACTODESYSTEMINFORMATION_HPP_*/