Cylindrical2dVertexMesh.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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This file is part of Chaste.

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modification, are permitted provided that the following conditions are met:
 * Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above copyright notice,
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   software without specific prior written permission.

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*/

#ifndef CYLINDRICAL2DVERTEXMESH_HPP_
#define CYLINDRICAL2DVERTEXMESH_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "MutableVertexMesh.hpp"

class Cylindrical2dVertexMesh : public MutableVertexMesh<2,2>
{
    friend class TestCylindrical2dVertexMesh;

private:

    double mWidth;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<MutableVertexMesh<2,2> >(*this);
        archive & mWidth;
    }

    Cylindrical2dVertexMesh();

public:

    Cylindrical2dVertexMesh(double width,
                            std::vector<Node<2>*> nodes,
                            std::vector<VertexElement<2,2>*> vertexElements,
                            double cellRearrangementThreshold=0.01,
                            double t2Threshold=0.001);

    ~Cylindrical2dVertexMesh();

    c_vector<double, 2> GetVectorFromAtoB(const c_vector<double, 2>& rLocation1, const c_vector<double, 2>& rLocation2);

    void SetNode(unsigned nodeIndex, ChastePoint<2> point);

    double GetWidth(const unsigned& rDimension) const;

    unsigned AddNode(Node<2>* pNewNode);

    double GetVolumeOfElement(unsigned index);

     c_vector<double, 2> GetCentroidOfElement(unsigned index);
};

#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(Cylindrical2dVertexMesh)

#endif /*CYLINDRICAL2DVERTEXMESH_HPP_*/