MonodomainAssembler.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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*/

#ifndef MONODOMAINASSEMBLER_HPP_
#define MONODOMAINASSEMBLER_HPP_


#include "AbstractCardiacFeVolumeIntegralAssembler.hpp"
#include "MonodomainTissue.hpp"
#include "MassMatrixAssembler.hpp"
#include "MonodomainStiffnessMatrixAssembler.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class MonodomainAssembler
   : public AbstractCardiacFeVolumeIntegralAssembler<ELEMENT_DIM,SPACE_DIM,1,false,true,CARDIAC>
{
protected:
    HeartConfig* mpConfig;

    MassMatrixAssembler<ELEMENT_DIM, SPACE_DIM> mMassMatrixAssembler;

    MonodomainStiffnessMatrixAssembler<ELEMENT_DIM, SPACE_DIM> mStiffnessMatrixAssembler;

public:

    c_matrix<double,1*(ELEMENT_DIM+1),1*(ELEMENT_DIM+1)> ComputeMatrixTerm(
                c_vector<double, ELEMENT_DIM+1> &rPhi,
                c_matrix<double, SPACE_DIM, ELEMENT_DIM+1> &rGradPhi,
                ChastePoint<SPACE_DIM> &rX,
                c_vector<double,1> &rU,
                c_matrix<double, 1, SPACE_DIM> &rGradU /* not used */,
                Element<ELEMENT_DIM,SPACE_DIM>* pElement);


    MonodomainAssembler(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                        MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* pTissue,
                        unsigned numQuadPoints = 2);
};

#endif /*MONODOMAINASSEMBLER_HPP_*/