CmguiDeformedSolutionsWriter.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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This file is part of Chaste.

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 * Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above copyright notice,
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   software without specific prior written permission.

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*/


#ifndef CMGUIDEFORMEDSOLUTIONSWRITER_HPP_
#define CMGUIDEFORMEDSOLUTIONSWRITER_HPP_

#include "CmguiMeshWriter.hpp"
#include "QuadraticMesh.hpp"

typedef enum CmguiMeshWriteType_
{
    WRITE_LINEAR_MESH = 0,
    WRITE_QUADRATIC_MESH
} CmguiMeshWriteType;

template<unsigned DIM>
class CmguiDeformedSolutionsWriter : public CmguiMeshWriter<DIM, DIM>
{
private:
    QuadraticMesh<DIM>* mpQuadraticMesh;

    unsigned mFinalCounter;

    unsigned mNumNodesToUse;

    unsigned GetNumNodes()
    {
        return mNumNodesToUse;
    }

public:
    CmguiDeformedSolutionsWriter(std::string outputDirectory,
                                 std::string baseName,
                                 QuadraticMesh<DIM>& rQuadraticMesh,
                                 CmguiMeshWriteType writeType);

    void WriteInitialMesh(std::string fileName = "");

    void WriteDeformationPositions(std::vector<c_vector<double,DIM> >& rDeformedPositions,
                                   unsigned counter);

    void WriteCmguiScript(std::string fieldBaseName="", std::string undeformedBaseName="");

    void ConvertOutput(std::string inputDirectory,
                       std::string inputFileBaseName,
                       unsigned finalCounter);
};



#endif /*CMGUIDEFORMEDSOLUTIONSWRITER_HPP_*/