Chaste Release::3.1
|
00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #ifndef DELTANOTCHODESYSTEM_HPP_ 00037 #define DELTANOTCHODESYSTEM_HPP_ 00038 00039 #include "ChasteSerialization.hpp" 00040 #include <boost/serialization/base_object.hpp> 00041 #include <boost/serialization/shared_ptr.hpp> 00042 00043 #include <cmath> 00044 #include <iostream> 00045 00046 #include "AbstractOdeSystem.hpp" 00047 00054 class DeltaNotchOdeSystem : public AbstractOdeSystem 00055 { 00056 private: 00057 00058 friend class boost::serialization::access; 00065 template<class Archive> 00066 void serialize(Archive & archive, const unsigned int version) 00067 { 00068 archive & boost::serialization::base_object<AbstractOdeSystem>(*this); 00069 } 00070 00072 00073 public: 00074 00080 DeltaNotchOdeSystem(std::vector<double> stateVariables=std::vector<double>()); 00081 00085 ~DeltaNotchOdeSystem(); 00086 00097 void EvaluateYDerivatives(double time, const std::vector<double>& rY, std::vector<double>& rDY); 00098 }; 00099 00100 // Declare identifier for the serializer 00101 #include "SerializationExportWrapper.hpp" 00102 CHASTE_CLASS_EXPORT(DeltaNotchOdeSystem) 00103 00104 namespace boost 00105 { 00106 namespace serialization 00107 { 00111 template<class Archive> 00112 inline void save_construct_data( 00113 Archive & ar, const DeltaNotchOdeSystem * t, const BOOST_PFTO unsigned int file_version) 00114 { 00115 const std::vector<double> state_variables = t->rGetConstStateVariables(); 00116 ar & state_variables; 00117 } 00118 00122 template<class Archive> 00123 inline void load_construct_data( 00124 Archive & ar, DeltaNotchOdeSystem * t, const unsigned int file_version) 00125 { 00126 std::vector<double> state_variables; 00127 ar & state_variables; 00128 00129 // Invoke inplace constructor to initialise instance 00130 ::new(t)DeltaNotchOdeSystem(state_variables); 00131 } 00132 } 00133 } // namespace ... 00134 00135 #endif /*DELTANOTCHODESYSTEM_HPP_*/