Chaste Release::3.1
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00001 /* 00002 00003 Copyright (c) 2005-2012, University of Oxford. 00004 All rights reserved. 00005 00006 University of Oxford means the Chancellor, Masters and Scholars of the 00007 University of Oxford, having an administrative office at Wellington 00008 Square, Oxford OX1 2JD, UK. 00009 00010 This file is part of Chaste. 00011 00012 Redistribution and use in source and binary forms, with or without 00013 modification, are permitted provided that the following conditions are met: 00014 * Redistributions of source code must retain the above copyright notice, 00015 this list of conditions and the following disclaimer. 00016 * Redistributions in binary form must reproduce the above copyright notice, 00017 this list of conditions and the following disclaimer in the documentation 00018 and/or other materials provided with the distribution. 00019 * Neither the name of the University of Oxford nor the names of its 00020 contributors may be used to endorse or promote products derived from this 00021 software without specific prior written permission. 00022 00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE 00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT 00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 00033 00034 */ 00035 00036 #ifndef ABSTRACTODEBASEDCONTRACTIONMODEL_ 00037 #define ABSTRACTODEBASEDCONTRACTIONMODEL_ 00038 00039 #include "AbstractOdeSystem.hpp" 00040 #include "AbstractContractionModel.hpp" 00041 #include "AbstractIvpOdeSolver.hpp" 00042 #include "EulerIvpOdeSolver.hpp" 00043 00058 class AbstractOdeBasedContractionModel : public AbstractOdeSystem, public AbstractContractionModel 00059 { 00060 protected: 00061 00064 std::vector<double> mTemporaryStateVariables; 00065 00067 double mTime; 00068 00069 public: 00074 AbstractOdeBasedContractionModel(unsigned numStateVariables) 00075 : AbstractOdeSystem(numStateVariables), 00076 AbstractContractionModel(), 00077 mTime(0.0) 00078 { 00079 // note mTemporaryStateVariables not resized here - only resized if needed 00080 } 00081 00082 00093 virtual void RunDoNotUpdate(double startTime, double endTime, double timeStep) 00094 { 00095 // save the state variables 00096 if(mTemporaryStateVariables.size()>0) 00097 { 00098 mTemporaryStateVariables.resize(mStateVariables.size()); 00099 } 00100 mTemporaryStateVariables = mStateVariables; 00101 00102 // solve (RunAndUpdate just calls SolveAndUpdateStateVariable() using an euler solver) 00103 RunAndUpdate(startTime, endTime, timeStep); 00104 00105 // put the solution in mTemporaryStateVariables and return the state variables to its 00106 // original state 00107 for(unsigned i=0; i<mStateVariables.size(); i++) 00108 { 00109 double soln = mStateVariables[i]; 00110 mStateVariables[i] = mTemporaryStateVariables[i]; 00111 mTemporaryStateVariables[i] = soln; 00112 } 00113 00114 // note that the end time was saved in RunAndUpdate(): mTime = endTime; 00115 } 00116 00121 void UpdateStateVariables() 00122 { 00123 // save the state variables 00124 for(unsigned i=0; i<mStateVariables.size(); i++) 00125 { 00126 mStateVariables[i] = mTemporaryStateVariables[i]; 00127 } 00128 } 00129 00142 void RunAndUpdate(double startTime, double endTime, double timeStep) 00143 { 00144 EulerIvpOdeSolver solver; 00145 solver.SolveAndUpdateStateVariable(this, startTime, endTime, timeStep); 00146 00147 mTime = endTime; 00148 } 00149 }; 00150 00151 00152 #endif /*ABSTRACTODEBASEDSTRETCHINDEPENDENTCONTRACTIONMODEL_*/