Chaste Release::3.1
AbstractOdeBasedContractionModel.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
00018    and/or other materials provided with the distribution.
00019  * Neither the name of the University of Oxford nor the names of its
00020    contributors may be used to endorse or promote products derived from this
00021    software without specific prior written permission.
00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #ifndef ABSTRACTODEBASEDCONTRACTIONMODEL_
00037 #define ABSTRACTODEBASEDCONTRACTIONMODEL_
00038 
00039 #include "AbstractOdeSystem.hpp"
00040 #include "AbstractContractionModel.hpp"
00041 #include "AbstractIvpOdeSolver.hpp"
00042 #include "EulerIvpOdeSolver.hpp"
00043 
00058 class AbstractOdeBasedContractionModel : public AbstractOdeSystem, public AbstractContractionModel
00059 {
00060 protected:
00061 
00064     std::vector<double> mTemporaryStateVariables;
00065 
00067     double mTime;
00068 
00069 public:
00074     AbstractOdeBasedContractionModel(unsigned numStateVariables)
00075         : AbstractOdeSystem(numStateVariables),
00076           AbstractContractionModel(),
00077           mTime(0.0)
00078     {
00079         // note mTemporaryStateVariables not resized here - only resized if needed
00080     }
00081 
00082 
00093     virtual void RunDoNotUpdate(double startTime, double endTime, double timeStep)
00094     {
00095         // save the state variables
00096         if(mTemporaryStateVariables.size()>0)
00097         {
00098             mTemporaryStateVariables.resize(mStateVariables.size());
00099         }
00100         mTemporaryStateVariables = mStateVariables;
00101 
00102         // solve (RunAndUpdate just calls SolveAndUpdateStateVariable() using an euler solver)
00103         RunAndUpdate(startTime, endTime, timeStep);
00104 
00105         // put the solution in mTemporaryStateVariables and return the state variables to its
00106         // original state
00107         for(unsigned i=0; i<mStateVariables.size(); i++)
00108         {
00109             double soln = mStateVariables[i];
00110             mStateVariables[i] = mTemporaryStateVariables[i];
00111             mTemporaryStateVariables[i] = soln;
00112         }
00113 
00114         // note that the end time was saved in RunAndUpdate(): mTime = endTime;
00115     }
00116 
00121     void UpdateStateVariables()
00122     {
00123         // save the state variables
00124         for(unsigned i=0; i<mStateVariables.size(); i++)
00125         {
00126             mStateVariables[i] = mTemporaryStateVariables[i];
00127         }
00128     }
00129 
00142     void RunAndUpdate(double startTime, double endTime, double timeStep)
00143     {
00144         EulerIvpOdeSolver solver;
00145         solver.SolveAndUpdateStateVariable(this, startTime, endTime, timeStep);
00146 
00147         mTime = endTime;
00148     }
00149 };
00150 
00151 
00152 #endif /*ABSTRACTODEBASEDSTRETCHINDEPENDENTCONTRACTIONMODEL_*/