Chaste Release::3.1
StochasticDurationGenerationBasedCellCycleModel.hpp
00001 /*
00002 
00003 Copyright (c) 2005-2012, University of Oxford.
00004 All rights reserved.
00005 
00006 University of Oxford means the Chancellor, Masters and Scholars of the
00007 University of Oxford, having an administrative office at Wellington
00008 Square, Oxford OX1 2JD, UK.
00009 
00010 This file is part of Chaste.
00011 
00012 Redistribution and use in source and binary forms, with or without
00013 modification, are permitted provided that the following conditions are met:
00014  * Redistributions of source code must retain the above copyright notice,
00015    this list of conditions and the following disclaimer.
00016  * Redistributions in binary form must reproduce the above copyright notice,
00017    this list of conditions and the following disclaimer in the documentation
00018    and/or other materials provided with the distribution.
00019  * Neither the name of the University of Oxford nor the names of its
00020    contributors may be used to endorse or promote products derived from this
00021    software without specific prior written permission.
00022 
00023 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
00024 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
00025 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
00026 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
00027 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
00028 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
00029 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
00030 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
00031 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
00032 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
00033 
00034 */
00035 
00036 #ifndef STOCHASTICDURATIONGENERATIONBASEDCELLCYCLEMODEL_HPP_
00037 #define STOCHASTICDURATIONGENERATIONBASEDCELLCYCLEMODEL_HPP_
00038 
00039 #include "AbstractSimpleGenerationBasedCellCycleModel.hpp"
00040 #include "RandomNumberGenerator.hpp"
00041 
00046 class StochasticDurationGenerationBasedCellCycleModel : public AbstractSimpleGenerationBasedCellCycleModel
00047 {
00048     friend class TestSimpleCellCycleModels;
00049 
00050 private:
00051 
00053     friend class boost::serialization::access;
00060     template<class Archive>
00061     void serialize(Archive & archive, const unsigned int version)
00062     {
00063         archive & boost::serialization::base_object<AbstractSimpleGenerationBasedCellCycleModel>(*this);
00064 
00065         // Make sure the RandomNumberGenerator singleton gets saved too
00066         SerializableSingleton<RandomNumberGenerator>* p_wrapper = RandomNumberGenerator::Instance()->GetSerializationWrapper();
00067         archive & p_wrapper;
00068     }
00069 
00075     void SetG1Duration();
00076 
00077 public:
00078 
00083     StochasticDurationGenerationBasedCellCycleModel();
00084 
00089     AbstractCellCycleModel* CreateCellCycleModel();
00090 
00096     virtual void OutputCellCycleModelParameters(out_stream& rParamsFile);
00097 };
00098 
00099 #include "SerializationExportWrapper.hpp"
00100 // Declare identifier for the serializer
00101 CHASTE_CLASS_EXPORT(StochasticDurationGenerationBasedCellCycleModel)
00102 
00103 #endif /*STOCHASTICDURATIONGENERATIONBASEDCELLCYCLEMODEL_HPP_*/