CryptProjectionForce.hpp

/*

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*/

#ifndef CRYPTPROJECTIONFORCE_HPP_
#define CRYPTPROJECTIONFORCE_HPP_

#include "GeneralisedLinearSpringForce.hpp"

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

class CryptProjectionForce : public GeneralisedLinearSpringForce<2>
{
    friend class TestCryptProjectionForce;

private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<GeneralisedLinearSpringForce<2> >(*this);
        archive & mA;
        archive & mB;
        archive & mIncludeWntChemotaxis;
        archive & mWntChemotaxisStrength;
    }

    double mA;

    double mB;

    bool mIncludeWntChemotaxis;

    double mWntChemotaxisStrength;

    std::map<unsigned, c_vector<double, 3> > mNode3dLocationMap;

    void UpdateNode3dLocationMap(AbstractCellPopulation<2>& rCellPopulation);

    c_vector<double,2> CalculateForceBetweenNodes(unsigned nodeAGlobalIndex, unsigned nodeBGlobalIndex, AbstractCellPopulation<2>& rCellPopulation);

public:

    CryptProjectionForce();

    ~CryptProjectionForce();

    double GetA() const;

    double GetB() const;

    double GetWntChemotaxisStrength();

    void SetWntChemotaxisStrength(double wntChemotaxisStrength);

    void SetWntChemotaxis(bool includeWntChemotaxis);

    double CalculateCryptSurfaceHeightAtPoint(const c_vector<double,2>& rNodeLocation);

    double CalculateCryptSurfaceDerivativeAtPoint(const c_vector<double,2>& rNodeLocation);

    void AddForceContribution(std::vector<c_vector<double,2> >& rForces,
                              AbstractCellPopulation<2>& rCellPopulation);

    void OutputForceParameters(out_stream& rParamsFile);
};

// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(CryptProjectionForce)

#endif /*CRYPTPROJECTIONFORCE_HPP_*/