, including all inherited members.
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh) | AbstractCellPopulation< DIM > | [protected] |
| AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, ELEMENT_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | |
| AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh) | AbstractOnLatticeCellPopulation< DIM > | [inline, protected] |
| AbstractOnLatticeCellPopulation(AbstractMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< DIM, DIM > > pCellWriter, CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| AbstractOnLatticeCellPopulation::AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, ELEMENT_DIM > > pCellWriter, CellPtr pCell)=0 | AbstractCellPopulation< DIM > | [pure virtual] |
| AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< DIM, DIM > > pPopulationWriter) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| AbstractOnLatticeCellPopulation::AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, ELEMENT_DIM > > pPopulationWriter)=0 | AbstractCellPopulation< DIM > | [pure virtual] |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | CaBasedCellPopulation< DIM > | [inline] |
| AbstractOnLatticeCellPopulation::AddCell(CellPtr pNewCell, const c_vector< double, ELEMENT_DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr())=0 | AbstractCellPopulation< DIM > | [pure virtual] |
| AddCellUsingLocationIndex(unsigned index, CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| AddCellWriter() | AbstractCellPopulation< DIM > | [inline] |
| AddPopulationWriter() | AbstractCellPopulation< DIM > | [inline] |
| AddUpdateRule(boost::shared_ptr< AbstractCaUpdateRule< DIM > > pUpdateRule) | CaBasedCellPopulation< DIM > | [inline] |
| Begin() | AbstractCellPopulation< DIM > | |
| boost::serialization::access class | CaBasedCellPopulation< DIM > | [friend] |
| CaBasedCellPopulation(PottsMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices, unsigned latticeCarryingCapacity=1u, bool deleteMesh=false, bool validate=false) | CaBasedCellPopulation< DIM > | [inline] |
| CaBasedCellPopulation(PottsMesh< DIM > &rMesh) | CaBasedCellPopulation< DIM > | [inline] |
| CloseOutputFiles() | AbstractCellPopulation< DIM > | [virtual] |
| CreateOrderedPair(unsigned index1, unsigned index2) | AbstractCellPopulation< DIM > | |
| End() | AbstractCellPopulation< DIM > | |
| EvaluateDivisionPropensity(unsigned currentNodeIndex, unsigned targetNodeIndex, CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GenerateCellResults() | AbstractCellPopulation< DIM > | [virtual] |
| GetCellAncestors() | AbstractCellPopulation< DIM > | |
| GetCellCyclePhaseCount() | AbstractCellPopulation< DIM > | |
| GetCellMutationStateCount() | AbstractCellPopulation< DIM > | |
| GetCellProliferativeTypeCount() | AbstractCellPopulation< DIM > | |
| GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | |
| GetCellsUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | [virtual] |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< DIM > | |
| GetIdentifier() const | Identifiable | |
| GetIterateRandomlyOverUpdateRuleCollection() | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | |
| GetLocationOfCellCentre(CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetNeighbouringNodeIndices(unsigned index) | AbstractOnLatticeCellPopulation< DIM > | [inline, virtual] |
| GetNode(unsigned index) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetNodeCorrespondingToCell(CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline] |
| GetNumAllCells() | AbstractCellPopulation< DIM > | |
| GetNumNodes() | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumRealCells() | AbstractCellPopulation< DIM > | |
| GetOutputResultsForChasteVisualizer() | AbstractCellPopulation< DIM > | |
| GetSizeOfCellPopulation() | AbstractCellPopulation< DIM > | |
| GetUpdateNodesInRandomOrder() | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| GetVolumeOfCell(CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetWidth(const unsigned &rDimension) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| HasWriter() const | AbstractCellPopulation< DIM > | [inline] |
| InitialiseCells() | AbstractCellPopulation< DIM > | |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| IsCellAttachedToLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | |
| IsRoomToDivide(CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| IsSiteAvailable(unsigned index, CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| mAvailableSpaces | CaBasedCellPopulation< DIM > | [private] |
| mCellCyclePhaseCount | AbstractCellPopulation< DIM > | [protected] |
| mCellLocationMap | AbstractCellPopulation< DIM > | [protected] |
| mCellMutationStateCount | AbstractCellPopulation< DIM > | [protected] |
| mCellPopulationWriters | AbstractCellPopulation< DIM > | [protected] |
| mCellProliferativeTypesCount | AbstractCellPopulation< DIM > | [protected] |
| mCells | AbstractCellPopulation< DIM > | [protected] |
| mCellWriters | AbstractCellPopulation< DIM > | [protected] |
| mCentroid | AbstractCellPopulation< DIM > | [protected] |
| mDeleteMesh | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mIterateRandomlyOverUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mLatticeCarryingCapacity | CaBasedCellPopulation< DIM > | [private] |
| mLocationCellMap | AbstractCellPopulation< DIM > | [protected] |
| mOutputResultsForChasteVisualizer | AbstractCellPopulation< DIM > | [protected] |
| MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index) | AbstractCellPopulation< DIM > | |
| mpCellPropertyRegistry | AbstractCellPopulation< DIM > | [protected] |
| mpVtkMetaFile | AbstractCellPopulation< DIM > | [protected] |
| mrMesh | AbstractCellPopulation< DIM > | [protected] |
| mUpdateNodesInRandomOrder | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mUpdateRuleCollection | CaBasedCellPopulation< DIM > | [private] |
| OpenWritersFiles(const std::string &rDirectory) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| OpenWritersFilesForAppend(const std::string &rDirectory) | AbstractCellPopulation< DIM > | |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | |
| OutputCellPopulationParameters(out_stream &rParamsFile) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| RemoveAllUpdateRules() | CaBasedCellPopulation< DIM > | [inline] |
| RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| RemoveDeadCells() | CaBasedCellPopulation< DIM > | [inline, virtual] |
| rGetAvailableSpaces() | CaBasedCellPopulation< DIM > | [inline] |
| rGetCells() | AbstractCellPopulation< DIM > | |
| rGetMesh() | CaBasedCellPopulation< DIM > | [inline] |
| rGetMesh() const | CaBasedCellPopulation< DIM > | [inline] |
| rGetUpdateRuleCollection() const | CaBasedCellPopulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | CaBasedCellPopulation< DIM > | [inline, private] |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | |
| SetCellUsingLocationIndex(unsigned index, CellPtr pCell) | AbstractCellPopulation< DIM > | |
| SetDataOnAllCells(const std::string &dataName, double dataValue) | AbstractCellPopulation< DIM > | |
| SetDefaultCellMutationStateAndProliferativeTypeOrdering() | AbstractCellPopulation< DIM > | |
| SetEmptySites(const std::set< unsigned > &rEmptySiteIndices) | CaBasedCellPopulation< DIM > | [private] |
| SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| AbstractCellPopulation< DIM >::SetNode(unsigned nodeIndex, ChastePoint< ELEMENT_DIM > &rNewLocation)=0 | AbstractCellPopulation< DIM > | [pure virtual] |
| SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer) | AbstractCellPopulation< DIM > | |
| SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| TestCaBasedCellPopulation (defined in CaBasedCellPopulation< DIM >) | CaBasedCellPopulation< DIM > | [friend] |
| Update(bool hasHadBirthsOrDeaths=true) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateCellLocations(double dt) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateCellProcessLocation() | AbstractCellPopulation< DIM > | [virtual] |
| Validate() | CaBasedCellPopulation< DIM > | [inline, private, virtual] |
| WriteResultsToFiles(const std::string &rDirectory) | AbstractCellPopulation< DIM > | [virtual] |
| WriteVtkResultsToFile(const std::string &rDirectory) | CaBasedCellPopulation< DIM > | [inline, private, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< DIM > | [virtual] |
| ~AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | [inline, virtual] |
| ~CaBasedCellPopulation() | CaBasedCellPopulation< DIM > | [inline, virtual] |
| ~Identifiable() | Identifiable | [virtual] |
