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| ApoptoticCellKiller | CvodeAdaptor | LinearBasisFunction | QuadraticMeshHelper |
| AbstractAlgebraicContractionModel | ApoptoticCellProperty | CvodeData_ | LinearBasisFunction< 0 > | QuadraturePointsGroup |
| AbstractAssemblerSolverHybrid | ArchiveLocationInfo | Cylindrical2dMesh | LinearParabolicPdeSystemWithCoupledOdeSystemSolver |
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| AbstractBackwardEulerCardiacCell | ArchiveOpener | Cylindrical2dNodesOnlyMesh | LinearSpringWithVariableSpringConstantsForce | RadialSloughingCellKiller |
| AbstractBackwardEulerCardiacCell< 0u > | AveragedSourcePde | Cylindrical2dVertexMesh | LinearSystem | RampedQuarterStimulusCellFactory |
| AbstractBidomainSolver | AxisymmetricConductivityTensors | CylindricalHoneycombMeshGenerator | LogFile | RandomCellKiller |
| AbstractBoundaryCondition |
| CylindricalHoneycombVertexMeshGenerator | LuoRudySpiralWaveCellFactory | RandomDirectionVertexBasedDivisionRule |
| AbstractBoundaryConditionsContainer | BackwardEulerIvpOdeSolver |
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| RandomNumberGenerator |
| AbstractCachedMeshReader | badsubseg | DataAtQuadraturePoint_ | MassMatrixAssembler | RegularStimulus |
| AbstractCardiacCell | badtriang | DataWriterVariable | MechanicsEventHandler | RegularStimulusZeroNetCharge |
| AbstractCardiacCellFactory | BathCellFactory | DefaultCellProliferativeType | MemfemMeshReader | RelativeTo |
| AbstractCardiacCellInterface | behavior | DeltaNotchCellCycleModel | memorypool | ReplicatableVector |
| AbstractCardiacCellWithModifiers | BetaCateninOneHitCellMutationState | DeltaNotchOdeSystem | mesh | RepulsionForce |
| AbstractCardiacFeVolumeIntegralAssembler | BidomainAssembler | DeltaNotchTrackingModifier | MeshalyzerMeshWriter | RungeKutta2IvpOdeSolver |
| AbstractCardiacMechanicsSolver | BidomainCorrectionTermAssembler | DiagonalVertexBasedDivisionRule | MeshBasedCellPopulation | RungeKutta4IvpOdeSolver |
| AbstractCardiacMechanicsSolverInterface | BidomainMassMatrixAssembler | DifferentialAdhesionPottsUpdateRule | MeshBasedCellPopulationWithGhostNodes | RungeKuttaFehlbergIvpOdeSolver |
| AbstractCardiacProblem | BidomainNeumannSurfaceTermAssembler | DifferentiatedCellProliferativeType | MeshEventHandler |
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| AbstractCardiacTissue | BidomainProblem | DiffusionCaUpdateRule | MeshPottsWriterIterators | S1S2Stimulus |
| AbstractCaUpdateRule | BidomainSolver | DiffusionForce | MeshWriterIterators | SchmidCostaExponentialLaw2d |
| AbstractCellBasedSimulation | BidomainTissue | DiscreteSystemForceCalculator | Mirams2010WntOdeSystem | SerializableSingleton |
| AbstractCellBasedSimulationModifier | BidomainWithBathAssembler | DistanceMapCalculator | MixedDimensionMesh | ShortAxisVertexBasedDivisionRule |
| AbstractCellBasedTestSuite | BidomainWithBathProblem | DistributedBoxCollection | MockEulerIvpOdeSolver | SimpleDataWriter |
| AbstractCellBasedWriter | BoundaryConditionsContainer | DistributedQuadraticMesh | MonodomainAssembler | SimpleLinearEllipticSolver |
| AbstractCellCycleModel | BoundaryElement | DistributedTetrahedralMesh | MonodomainCorrectionTermAssembler | SimpleLinearParabolicSolver |
| AbstractCellCycleModelOdeSolver | BoundaryNodeWriter | DistributedTetrahedralMeshPartitionType | MonodomainProblem | SimpleNewtonNonlinearSolver |
| AbstractCellKiller | Box | DistributedVector | MonodomainSolver | SimpleNonlinearEllipticSolver |
| AbstractCellMutationState | BoxCollection | DistributedVectorException | MonodomainStiffnessMatrixAssembler | SimpleOxygenBasedCellCycleModel |
| AbstractCellPopulation | BuskeAdhesiveForce | DistributedVectorFactory | MonodomainTissue | SimplePetscNonlinearSolver |
| AbstractCellPopulationBoundaryCondition | BuskeCompressionForce | DummyModifier | MooneyRivlinMaterialLaw | SimpleStimulus |
| AbstractCellPopulationWriter | BuskeElasticForce | DynamicCellModelLoader | MultiStimulus | SimpleTargetAreaModifier |
| AbstractCellProliferativeType |
| DynamicModelLoaderRegistry | MutableElement | SimpleUniformSourcePde |
| AbstractCellProperty | CaBasedCellPopulation |
| MutableElement< 1, SPACE_DIM > | SimpleWntCellCycleModel |
| AbstractCellWriter | CARDIAC_CELL | TetrahedralMesh::EdgeIterator | MutableMesh | SimulationTime |
| AbstractCentreBasedCellPopulation | CardiacElectroMechanicsProblem | ELASTICITY_SOLVER | MutableVertexMesh | SingleOdeWntCellCycleModel |
| AbstractChasteRegion | CardiacElectroMechProbRegularGeom | Electrodes |
| SloughingCellKiller |
| AbstractCompressibleMaterialLaw | CardiacNewtonSolver | ElectrodesStimulusFactory | NagaiHondaDifferentialAdhesionForce | SolidMechanicsProblemDefinition |
| AbstractConductivityModifier | CardiacSimulation | ElectroMechanicsProblemDefinition | NagaiHondaForce | SpaceConvergenceTester |
| AbstractConductivityTensors | CardiacSimulationArchiver | Element | Nash2004ContractionModel | SphereGeometryBoundaryCondition |
| AbstractContinuumMechanicsAssembler | Cell | ElementAndWeights | NashHunterPoleZeroLaw | splaynode |
| AbstractContinuumMechanicsSolver | CellAgesWriter | ElementData | NaturalNeumannSurfaceTermAssembler | MeshBasedCellPopulation::SpringIterator |
| AbstractContractionCellFactory | CellAncestor | AbstractTetrahedralMesh::ElementIterator | NhsContractionModel | SteadyStateRestitutionStimulus |
| AbstractContractionModel | CellAncestorWriter | AbstractMeshReader::ElementIterator | NhsModelWithBackwardSolver | SteadyStateRunner |
| AbstractConvergenceTester | CellBasedEventHandler | enable_shared_from_this (boost) | Node | StemCellProliferativeType |
| AbstractCorrectionTermAssembler | CellBasedPdeHandler | EulerIvpOdeSolver | NodeAttributes | StiffnessMatrixAssembler |
| AbstractCryptStatistics | CellBasedPdeHandlerOnCuboid | event | NodeBasedCellPopulation | StimulusBoundaryCondition |
| AbstractCvodeCell | CellBasedPdeSolver | AbstractLookupTableCollection::EventHandler | NodeBasedCellPopulationWithBuskeUpdate | StochasticDurationCellCycleModel |
| AbstractCvodeSystem | CellBasedSimulationArchiver | Exception | NodeBasedCellPopulationWithParticles | StochasticDurationGenerationBasedCellCycleModel |
| AbstractDataReader | CellBetaCateninWriter | ExecutableSupport | AbstractMeshReader::NodeIterator | StochasticOxygenBasedCellCycleModel |
| AbstractDataWriter | CellCycleModelOdeHandler | ExplicitCardiacMechanicsSolver | AbstractMesh::NodeIterator | StochasticWntCellCycleModel |
| AbstractDynamicallyLoadableEntity | CellCycleModelOdeSolver | ExponentiallyDistributedStochasticDurationGenerationBasedCellCycleModel | NodeLocationWriter | StokesFlowAssembler |
| AbstractDynamicLinearPdeSolver | CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver > | ExponentialMaterialLaw | NodeMap | StokesFlowPreconditionerAssembler |
| AbstractElement | CellData | ExtendedBidomainAssembler | NodePartitioner | StokesFlowProblemDefinition |
| AbstractExtendedBidomainSolver | CellId | ExtendedBidomainMassMatrixAssembler | NodesOnlyMesh | StokesFlowSolver |
| AbstractFeAssemblerCommon | CellIdWriter | ExtendedBidomainNeumannSurfaceTermAssembler | NodeVelocityWriter | StreeterFibreGenerator |
| AbstractFeAssemblerInterface | CellLabel | ExtendedBidomainProblem | NonCachedTetrahedralMesh | StressPerElementWriter |
| AbstractFeCableIntegralAssembler | CellLabelWriter | ExtendedBidomainSolver | noncopyable (boost) | DistributedVector::Stripe |
| AbstractFeSurfaceIntegralAssembler | CellLocationWriter | ExtendedBidomainTissue | NonlinearElasticityTools | SurfaceAreaConstraintPottsUpdateRule |
| AbstractFeVolumeIntegralAssembler | CellMLLoader |
| NonPhysiologicalContractionModel | Swan2012AcinarUnit |
| AbstractFileComparison | CellMLToSharedLibraryConverter | FactorModifier | null_deleter |
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| AbstractForce | CellMutationStatesCountWriter | FakeBathCell | NumericFileComparison | T2SwapCellKiller |
| AbstractFunctionalCalculator | CellMutationStatesWriter | FakeBathContractionModel |
| TargetedCellKiller |
| AbstractGeneralizedRushLarsenCardiacCell | CellPopulationAreaWriter | FarhadifarForce | ObjectCommunicator | CxxTest::TestSuite |
| AbstractHdf5Access | CellPopulationElementWriter | FarhadifarTypeModifier | OdeConvergenceTester | TetrahedralMesh |
| AbstractHdf5Converter | CellProliferativePhasesCountWriter | FemlabMeshReader | OdeLinearSystemSolver | TimeModifier |
| AbstractIncompressibleMaterialLaw | CellProliferativePhasesWriter | FibreConverter | OdePdeConvergenceTester | Timer |
| AbstractIsotropicCompressibleMaterialLaw | CellProliferativeTypesCountWriter | FibreReader | OdeSolution | TimeStepper |
| AbstractIsotropicIncompressibleMaterialLaw | CellProliferativeTypesWriter | FibreWriter | OdeSystemForCoupledHeatEquation | Toroidal2dVertexMesh |
| AbstractIvpOdeSolver | CellProperties | FileComparison | OdeSystemForCoupledHeatEquationWithSource | ToroidalHoneycombVertexMeshGenerator |
| AbstractLinearEllipticPde | CellPropertyCollection | FileFinder | OdeSystemInformation | TransitCellProliferativeType |
| AbstractLinearParabolicPde | CellPropertyRegistry | XmlTools::Finalizer | OffLatticeSimulation | TrianglesMeshReader |
| AbstractLinearParabolicPdeSystemForCoupledOdeSystem | CellsGenerator | FineCoarseMeshPair | OnLatticeSimulation | TrianglesMeshWriter |
| AbstractLinearPdeSolver | CellVariablesWriter | FitzHughNagumo1961OdeSystem | OperatorSplittingMonodomainSolver | TysonNovak2001OdeSystem |
| AbstractLookupTableCollection | CellVolumesWriter | FixedDurationGenerationBasedCellCycleModel | OrthotropicConductivityTensors | TysonNovakCellCycleModel |
| AbstractMaterialLaw | CellwiseDataGradient | FixedModifier | osub |
|
| AbstractMesh | CellwiseOdeSystemInformation | flipstacker | otri | VanLeeuwen2009WntSwatCellCycleModelHypothesisOne |
| AbstractMeshReader | CellwiseSourcePde | FourthOrderTensor | OutputDirectoryFifoQueue | VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo |
| AbstractMeshWriter | ChasteBuildInfo | FunctionalBoundaryCondition | OutputFileHandler | VanLeeuwen2009WntSwatCellCycleOdeSystem |
| AbstractModifier | ChasteCuboid |
|
| CombinedOdeSystem::VariableParameterMap |
| AbstractNonlinearAssemblerSolverHybrid | ChasteEllipsoid | GammaDistributedStochasticDurationCellCycleModel | pack< void(T)> | VentilationProblem |
| AbstractNonlinearElasticitySolver | ChasteNodesList | GaussianQuadratureRule | PapillaryFibreCalculator | version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > > (boost::serialization) |
| AbstractNonlinearEllipticPde | ChastePoint | GeneralisedLinearSpringForce | ParallelCellsGenerator | version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > > (boost::serialization) |
| AbstractNonlinearSolver | ChastePoint< 0 > | GeneralPlaneStimulusCellFactory | ParallelColumnDataWriter | version< AbstractChasteRegion< SPACE_DIM > > (boost::serialization) |
| AbstractOdeBasedCellCycleModel | ChastePosixPathFixer | GenericEventHandler | PCBlockDiagonal | version< AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > > (boost::serialization) |
| AbstractOdeBasedContractionModel | ChemotacticForce | CxxTest::GlobalFixture | PCBlockDiagonal::PCBlockDiagonalContext | VertexBasedCellPopulation |
| AbstractOdeSystem | ChemotaxisPottsUpdateRule | GmshMeshReader | PCLDUFactorisation | VertexCryptBoundaryForce |
| AbstractOdeSystemForCoupledPdeSystem | DistributedVector::Chunk | GmshTypes | PCLDUFactorisation::PCLDUFactorisationContext | VertexElement |
| AbstractOdeSystemInformation | CmguiDeformedSolutionsWriter | GRL1IvpOdeSolver | PCTwoLevelsBlockDiagonal | VertexElement< 1, SPACE_DIM > |
| AbstractOdeSystemWithAnalyticJacobian | CmguiMeshWriter | GRL2IvpOdeSolver | PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext | VertexElementData |
| AbstractOffLatticeCellPopulation | CML_noble_varghese_kohl_noble_1998_basic_with_sac |
| PdeAndBoundaryConditions | VertexMesh::VertexElementIterator |
| AbstractOneStepIvpOdeSolver | ColumnDataReader | Hdf5DataReader | PdeConvergenceTester | VertexElementMap |
| AbstractOnLatticeCellPopulation | ColumnDataWriter | Hdf5DataWriter | PdeSimulationTime | VertexMesh |
| AbstractParameterisedSystem | CombinedOdeSystem | Hdf5ToCmguiConverter | PetscMatTools | VertexMeshReader |
| AbstractPerElementWriter | CombinedOdeSystemInformation | Hdf5ToMeshalyzerConverter | PetscSetup | VertexMeshWriter |
| AbstractPottsUpdateRule | CommandLineArguments | Hdf5ToTxtConverter | PetscSetupUtils | VertexT1SwapLocationsWriter |
| AbstractPurkinjeCellFactory | CommandLineArgumentsMocker | Hdf5ToVtkConverter | PetscTools | VertexT2SwapLocationsWriter |
| AbstractRushLarsenCardiacCell | CompareDoubles | Hdf5ToXdmfConverter | PetscVecTools | VertexT3SwapLocationsWriter |
| AbstractSimpleCellCycleModel | CompressibleExponentialLaw | HeartConfig | PlaneBasedCellKiller | VoltageInterpolaterOntoMechanicsMesh |
| AbstractSimpleGenerationBasedCellCycleModel | CompressibleMooneyRivlinMaterialLaw | HeartConfigRelatedCellFactory | PlaneBoundaryCondition | VolumeConstraintPottsUpdateRule |
| AbstractStaticLinearPdeSolver | CompressibleNonlinearElasticitySolver | HeartEventHandler | PlaneStimulusCellFactory | VolumeDependentAveragedSourcePde |
| AbstractSteadyStateRunner | ConstantActiveTension | HeartFileFinder | PoleZeroMaterialLaw | VolumeTrackingModifier |
| AbstractStimulusFactory | ConstBoundaryCondition | HeartGeometryInformation | PolynomialMaterialLaw3d | VoronoiDataWriter |
| AbstractStimulusFunction | ContactInhibitionCellCycleModel | HeartRegionCode | PostProcessingWriter | VtkMeshReader |
| AbstractTargetAreaModifier | Node::ContainingBoundaryElementIterator | HeunIvpOdeSolver | PottsBasedCellPopulation | VtkMeshWriter |
| AbstractTetrahedralElement | Node::ContainingElementIterator | HoneycombMeshGenerator | PottsElement | VtkNonlinearElasticitySolutionWriter |
| AbstractTetrahedralElement< 0, SPACE_DIM > | ContinuumMechanicsNeumannBcsAssembler | HoneycombVertexMeshGenerator | PottsElementData |
|
| AbstractTetrahedralMesh | ContinuumMechanicsProblemDefinition |
| PottsMesh::PottsElementIterator | Warnings |
| AbstractTetrahedralMeshWriter | ContractionModelInputParameters_ | Identifiable | PottsMesh | WelikyOsterForce |
| AbstractTimeAdaptivityController | CorriasBuistICCModified | ImplicitCardiacMechanicsSolver | PottsMeshGenerator | WildTypeCellMutationState |
| AbstractTwoBodyInteractionForce | CorriasBuistSMCModified | IncompressibleNonlinearElasticitySolver | PottsMeshReader | WntCellCycleModel |
| AbstractUntemplatedCardiacProblem | CreateElectricsProblem | CombinedOdeSystemInformation::InstancePointers | PottsMeshWriter | WntCellCycleOdeSystem |
| AbstractUntemplatedConvergenceTester | CreateElectricsProblem< DIM, 1u > | IsolatedLabelledCellKiller | ProcessSpecificArchive | WntConcentration |
| AbstractUntemplatedParameterisedSystem | CreateElectricsProblem< DIM, 2u > | DistributedVector::Iterator | ProgressReporter |
|
| AbstractVanLeeuwen2009WntSwatCellCycleModel | CryptCellsGenerator | AbstractCellPopulation::Iterator | PropagationPropertiesCalculator | XdmfMeshWriter |
| AbstractVertexBasedDivisionRule | CryptProjectionForce | iterator_facade (boost) | PseudoEcgCalculator | XmlTools |
| AbstractWntOdeBasedCellCycleModel | CryptProjectionStatistics |
| PurkinjeVentricularJunctionStimulus | XmlTransforms |
| AdhesionPottsUpdateRule | CryptSimulation1d | Kerchoffs2003ContractionModel |
|
|
| Alarcon2004OxygenBasedCellCycleModel | CryptSimulation2d |
| QuadraticBasisFunction | ZeroNetChargeElectrodes |
| Alarcon2004OxygenBasedCellCycleOdeSystem | CryptSimulationBoundaryCondition | LabelBasedContractionCellFactory | QuadraticBasisFunction< 0 > | ZeroStimulus |
| ApcOneHitCellMutationState | CryptStatistics | LessThanNode | QuadraticMesh | ZeroStimulusCellFactory |
| ApcTwoHitCellMutationState | CuboidMeshConstructor |
