CellwiseSourcePde< DIM > Class Template Reference

#include <CellwiseSourcePde.hpp>

Inherits AbstractLinearEllipticPde< DIM, DIM >.

Collaboration diagram for CellwiseSourcePde< DIM >:

[legend]

List of all members.

Public Member Functions
	CellwiseSourcePde (AbstractCellPopulation< DIM, DIM > &rCellPopulation, double coefficient=0.0)
const AbstractCellPopulation < DIM > &	rGetCellPopulation () const
double	GetCoefficient () const
virtual double	ComputeConstantInUSourceTerm (const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
virtual double	ComputeLinearInUCoeffInSourceTerm (const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
virtual double	ComputeLinearInUCoeffInSourceTermAtNode (const Node< DIM > &rNode)
virtual c_matrix< double, DIM, DIM >	ComputeDiffusionTerm (const ChastePoint< DIM > &rX)
Protected Attributes
AbstractCellPopulation< DIM, DIM > &	mrCellPopulation
double	mCoefficient
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
Friends
class	TestCellBasedPdes
class	boost::serialization::access

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Detailed Description

template<unsigned DIM>
class CellwiseSourcePde< DIM >

A PDE which has a source at each non-apoptotic cell.

Definition at line 49 of file CellwiseSourcePde.hpp.

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Constructor & Destructor Documentation

template<unsigned DIM>

CellwiseSourcePde< DIM >::CellwiseSourcePde	(	AbstractCellPopulation< DIM, DIM > &	rCellPopulation,
		double	coefficient = 0.0
	)			[inline]

Constructor.

Parameters:

	rCellPopulation	reference to the cell population
	coefficient	the coefficient of consumption of nutrient by cells (defaults to 0.0)

Definition at line 41 of file CellwiseSourcePde.cpp.

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Member Function Documentation

template<unsigned DIM>

double CellwiseSourcePde< DIM >::ComputeConstantInUSourceTerm	(	const ChastePoint< DIM > &	rX,
		Element< DIM, DIM > *	pElement
	)			[inline, virtual]

Overridden ComputeConstantInUSourceTerm() method.

Parameters:

	rX	The point in space
	pElement	The element

Returns:

the constant in u part of the source term, i.e g(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 60 of file CellwiseSourcePde.cpp.

template<unsigned DIM>

c_matrix< double, DIM, DIM > CellwiseSourcePde< DIM >::ComputeDiffusionTerm

(

const ChastePoint< DIM > &

rX

)

[inline, virtual]

Overridden ComputeDiffusionTerm() method.

Parameters:

rX

The point in space at which the diffusion term is computed

Returns:

a matrix.

Definition at line 93 of file CellwiseSourcePde.cpp.

template<unsigned DIM>

double CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTerm	(	const ChastePoint< DIM > &	rX,
		Element< DIM, DIM > *	pElement
	)			[inline, virtual]

Overridden ComputeLinearInUCoeffInSourceTerm() method.

Parameters:

	rX	The point in space
	pElement	the element

Returns:

the coefficient of u in the linear part of the source term, i.e f(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 66 of file CellwiseSourcePde.cpp.

References NEVER_REACHED.

template<unsigned DIM>

double CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTermAtNode

(

const Node< DIM > &

rNode

)

[inline, virtual]

Overridden ComputeLinearInUCoeffInSourceTermAtNode() method.

Parameters:

rNode

reference to the node

Returns:

the coefficient of u in the linear part of the source term, i.e f(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 73 of file CellwiseSourcePde.cpp.

References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellUsingLocationIndex(), Node< SPACE_DIM >::GetIndex(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::IsCellAttachedToLocationIndex(), CellwiseSourcePde< DIM >::mCoefficient, and CellwiseSourcePde< DIM >::mrCellPopulation.

template<unsigned DIM>

double CellwiseSourcePde< DIM >::GetCoefficient

(

)

const [inline]

Returns:

mCoefficient (used in archiving).

Definition at line 54 of file CellwiseSourcePde.cpp.

References CellwiseSourcePde< DIM >::mCoefficient.

template<unsigned DIM>

const AbstractCellPopulation< DIM, DIM > & CellwiseSourcePde< DIM >::rGetCellPopulation

(

)

const [inline]

Returns:

const reference to the cell population (used in archiving).

Definition at line 48 of file CellwiseSourcePde.cpp.

References CellwiseSourcePde< DIM >::mrCellPopulation.

template<unsigned DIM>

template<class Archive >

void CellwiseSourcePde< DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)			[inline, private]

Serialize the PDE and its member variables.

Parameters:

	archive	the archive
	version	the current version of this class

Reimplemented from AbstractLinearEllipticPde< DIM, DIM >.

Definition at line 64 of file CellwiseSourcePde.hpp.

References CellwiseSourcePde< DIM >::mCoefficient.

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Friends And Related Function Documentation

template<unsigned DIM>

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractLinearEllipticPde< DIM, DIM >.

Definition at line 56 of file CellwiseSourcePde.hpp.

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Member Data Documentation

template<unsigned DIM>

double CellwiseSourcePde< DIM >::mCoefficient [protected]

Coefficient of consumption of nutrient by cells.

Definition at line 76 of file CellwiseSourcePde.hpp.

Referenced by CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTermAtNode(), CellwiseSourcePde< DIM >::GetCoefficient(), and CellwiseSourcePde< DIM >::serialize().

template<unsigned DIM>

AbstractCellPopulation<DIM, DIM>& CellwiseSourcePde< DIM >::mrCellPopulation [protected]

The cell population member.

Definition at line 73 of file CellwiseSourcePde.hpp.

Referenced by CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTermAtNode(), and CellwiseSourcePde< DIM >::rGetCellPopulation().

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The documentation for this class was generated from the following files:

• cell_based/src/population/pdes/CellwiseSourcePde.hpp
• cell_based/src/population/pdes/CellwiseSourcePde.cpp