MonodomainProblem< ELEMENT_DIM, SPACE_DIM > Class Template Reference
#include <MonodomainProblem.hpp>
Inherits AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Public Member Functions | |
| AbstractCardiacTissue < ELEMENT_DIM, SPACE_DIM > * | CreateCardiacTissue () |
| AbstractDynamicLinearPdeSolver < ELEMENT_DIM, SPACE_DIM, 1 > * | CreateSolver () |
| MonodomainProblem (AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > *pCellFactory) | |
| MonodomainProblem () | |
| virtual | ~MonodomainProblem () |
| MonodomainTissue< ELEMENT_DIM, SPACE_DIM > * | GetMonodomainTissue () |
| void | WriteInfo (double time) |
| virtual void | DefineWriterColumns (bool extending) |
| virtual void | WriteOneStep (double time, Vec voltageVec) |
Protected Attributes | |
| MonodomainTissue< ELEMENT_DIM, SPACE_DIM > * | mpMonodomainTissue |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
Class which specifies and solves a monodomain problem.
Definition at line 54 of file MonodomainProblem.hpp.
Constructor & Destructor Documentation
| MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::MonodomainProblem | ( | AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM > * | pCellFactory | ) | [inline] |
Constructor
- Parameters:
-
pCellFactory User defined cell factory which shows how the pde should create cells.
Definition at line 80 of file MonodomainProblem.cpp.
| MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::MonodomainProblem | ( | ) | [inline] |
Constructor just used for archiving
Definition at line 87 of file MonodomainProblem.cpp.
| MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::~MonodomainProblem | ( | ) | [inline, virtual] |
Destructor
Definition at line 94 of file MonodomainProblem.cpp.
Member Function Documentation
| AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > * MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateCardiacTissue | ( | ) | [inline, virtual] |
- Returns:
- Created monodomain tissue.
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 45 of file MonodomainProblem.cpp.
References HeartConfig::GetUseStateVariableInterpolation(), HeartConfig::Instance(), AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpCellFactory, and MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue.
| AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 1 > * MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateSolver | ( | ) | [inline, virtual] |
- Returns:
- Created suitable solver for monodomain problems.
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 52 of file MonodomainProblem.cpp.
References HeartConfig::Instance(), AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpBoundaryConditionsContainer, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpMesh, and MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue.
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::DefineWriterColumns | ( | bool | extending | ) | [inline, virtual] |
Define what variables are written to the primary results file.
- Parameters:
-
extending whether we are extending an existing results file
Reimplemented from AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 125 of file MonodomainProblem.cpp.
References AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::DefineExtraVariablesWriterColumns().
| MonodomainTissue< ELEMENT_DIM, SPACE_DIM > * MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::GetMonodomainTissue | ( | ) | [inline] |
- Returns:
- the monodomain PDE
Definition at line 99 of file MonodomainProblem.cpp.
References MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue.
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Archive the member variables.
- Parameters:
-
archive version
Definition at line 65 of file MonodomainProblem.hpp.
References MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue.
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::WriteInfo | ( | double | time | ) | [inline, virtual] |
Print out time and max/min voltage values at current time.
- Parameters:
-
time the current time
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 106 of file MonodomainProblem.cpp.
References PetscTools::AmMaster(), and AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mSolution.
| void MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::WriteOneStep | ( | double | time, | |
| Vec | voltageVec | |||
| ) | [inline, virtual] |
Write one timestep of output data to the primary results file. Adds the voltage to the results.
- Parameters:
-
time the current time voltageVec the solution vector to write
Implements AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 132 of file MonodomainProblem.cpp.
References AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mpWriter, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::mVoltageColumnId, Hdf5DataWriter::PutUnlimitedVariable(), Hdf5DataWriter::PutVector(), and AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::WriteExtraVariablesOneStep().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >.
Definition at line 57 of file MonodomainProblem.hpp.
Member Data Documentation
MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue [protected] |
The monodomain tissue object.
Definition at line 73 of file MonodomainProblem.hpp.
Referenced by MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateCardiacTissue(), MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::CreateSolver(), MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::GetMonodomainTissue(), and MonodomainProblem< ELEMENT_DIM, SPACE_DIM >::serialize().
The documentation for this class was generated from the following files:
- heart/src/problem/MonodomainProblem.hpp
- heart/src/problem/MonodomainProblem.cpp
