ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM > Class Template Reference

#include <ParallelCellsGenerator.hpp>

List of all members.

Public Member Functions

void GenerateParallelCells (std::string archivePath, std::vector< CellPtr > &cells, NodesOnlyMesh< DIM > &mesh, boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >())

Private Member Functions

c_vector< double, 2 *DIM > GetArchiveBoundingBox (std::string archivePath)

Friends

class TestParallelCellsGenerator

Detailed Description

template<class CELL_CYCLE_MODEL, unsigned DIM>
class ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >

A helper class for generating a vector of cells and a NodesOnlyMesh from an archive file without loading all cells to memory on each processor.

Definition at line 50 of file ParallelCellsGenerator.hpp.

Member Function Documentation

template<class CELL_CYCLE_MODEL , unsigned DIM>
void ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateParallelCells ( std::string  archivePath,
std::vector< CellPtr > &  cells,
NodesOnlyMesh< DIM > &  mesh,
boost::shared_ptr< AbstractCellProperty >  pCellProliferativeType = boost::shared_ptr<AbstractCellProperty>() 
) [inline]

Generate nodes and cells for a given decomposition of space, dictated by mesh.

Parameters:
archivePath the name of the file containing the cell locations
cells a reference to an empty vector into which cells can be inserted.
mesh a reference to the mesh that will store the nodes.
pCellProliferativeType the proliferative type of the cells.

Definition at line 82 of file ParallelCellsGenerator.hpp.

References NodesOnlyMesh< SPACE_DIM >::AddNode(), ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GetArchiveBoundingBox(), NodesOnlyMesh< SPACE_DIM >::GetMaximumInteractionDistance(), NodesOnlyMesh< SPACE_DIM >::GetMaximumNodeIndex(), CellPropertyRegistry::Instance(), NodesOnlyMesh< SPACE_DIM >::IsOwned(), NodesOnlyMesh< SPACE_DIM >::ReMesh(), and NodesOnlyMesh< SPACE_DIM >::SetInitialBoxCollection().

template<class CELL_CYCLE_MODEL , unsigned DIM>
c_vector< double, 2 *DIM > ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GetArchiveBoundingBox ( std::string  archivePath  )  [inline, private]

Calculate the bounding box of all positions in the archive path.

Parameters:
archivePath the path to the cell location archive.
Returns:
the bounding box in format [xmin, xmax...].

Definition at line 145 of file ParallelCellsGenerator.hpp.

References EXCEPTION.

Referenced by ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateParallelCells().

The documentation for this class was generated from the following file:
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