BidomainSolver.hpp

/*

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*/


#ifndef BIDOMAINSOLVER_HPP_
#define BIDOMAINSOLVER_HPP_


#include "UblasIncludes.hpp"

//#include <iostream>
#include <vector>
#include <petscvec.h>

#include "AbstractBidomainSolver.hpp"
#include "HeartConfig.hpp"
#include "BidomainAssembler.hpp"
#include "BidomainMassMatrixAssembler.hpp"
#include "BidomainCorrectionTermAssembler.hpp"
#include "BidomainNeumannSurfaceTermAssembler.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class BidomainSolver : public AbstractBidomainSolver<ELEMENT_DIM,SPACE_DIM>
{
private:
    Mat mMassMatrix;

    Vec mVecForConstructingRhs;

    BidomainAssembler<ELEMENT_DIM,SPACE_DIM>* mpBidomainAssembler;

    BidomainNeumannSurfaceTermAssembler<ELEMENT_DIM,SPACE_DIM>* mpBidomainNeumannSurfaceTermAssembler;

    BidomainCorrectionTermAssembler<ELEMENT_DIM,SPACE_DIM>* mpBidomainCorrectionTermAssembler;


    void InitialiseForSolve(Vec initialSolution);

    void SetupLinearSystem(Vec currentSolution, bool computeMatrix);



public:
    BidomainSolver(bool bathSimulation,
                   AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                   BidomainTissue<SPACE_DIM>* pTissue,
                   BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,2>* pBoundaryConditions);

    ~BidomainSolver();
};


#endif /*BIDOMAINSOLVER_HPP_*/