MonodomainSolver.hpp

/*

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*/

#ifndef MONODOMAINSOLVER_HPP_
#define MONODOMAINSOLVER_HPP_

#include "AbstractDynamicLinearPdeSolver.hpp"
#include "MassMatrixAssembler.hpp"
#include "NaturalNeumannSurfaceTermAssembler.hpp"
#include "MonodomainCorrectionTermAssembler.hpp"
#include "MonodomainTissue.hpp"
#include "MonodomainAssembler.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class MonodomainSolver
  : public AbstractDynamicLinearPdeSolver<ELEMENT_DIM,SPACE_DIM,1>
{
private:

    MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* mpMonodomainTissue;

    BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,1>* mpBoundaryConditions;

    MonodomainAssembler<ELEMENT_DIM,SPACE_DIM>* mpMonodomainAssembler;

    NaturalNeumannSurfaceTermAssembler<ELEMENT_DIM,SPACE_DIM,1>* mpNeumannSurfaceTermsAssembler;

    MonodomainCorrectionTermAssembler<ELEMENT_DIM,SPACE_DIM>* mpMonodomainCorrectionTermAssembler;

    Mat mMassMatrix;

    Vec mVecForConstructingRhs;


    void SetupLinearSystem(Vec currentSolution, bool computeMatrix);

public:
    void PrepareForSetupLinearSystem(Vec currentSolution);

    virtual void InitialiseForSolve(Vec initialSolution);

    MonodomainSolver(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                     MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* pTissue,
                     BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,1>* pBoundaryConditions);

    virtual ~MonodomainSolver();
};



#endif /*MONODOMAINSOLVER_HPP_*/