AbstractCellCycleModelOdeSolver.cpp

/*

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*/

#include "AbstractCellCycleModelOdeSolver.hpp"
#include "CvodeAdaptor.hpp"
#include "Exception.hpp"

AbstractCellCycleModelOdeSolver::AbstractCellCycleModelOdeSolver()
    : mSizeOfOdeSystem(UNSIGNED_UNSET)
{
}

AbstractCellCycleModelOdeSolver::~AbstractCellCycleModelOdeSolver()
{
}

void AbstractCellCycleModelOdeSolver::Reset()
{
}

void AbstractCellCycleModelOdeSolver::SolveAndUpdateStateVariable(AbstractOdeSystem* pAbstractOdeSystem,
                                                                  double startTime,
                                                                  double endTime,
                                                                  double timeStep)
{
    assert(IsSetUp());
    mpOdeSolver->SolveAndUpdateStateVariable(pAbstractOdeSystem, startTime, endTime, timeStep);
}

bool AbstractCellCycleModelOdeSolver::StoppingEventOccurred()
{
    assert(IsSetUp());
    return mpOdeSolver->StoppingEventOccurred();
}

double AbstractCellCycleModelOdeSolver::GetStoppingTime()
{
    assert(IsSetUp());
    return mpOdeSolver->GetStoppingTime();
}

void AbstractCellCycleModelOdeSolver::SetSizeOfOdeSystem(unsigned sizeOfOdeSystem)
{
    mSizeOfOdeSystem = sizeOfOdeSystem;
}

unsigned AbstractCellCycleModelOdeSolver::GetSizeOfOdeSystem()
{
    return mSizeOfOdeSystem;
}

void AbstractCellCycleModelOdeSolver::CheckForStoppingEvents()
{
#ifdef CHASTE_CVODE
    assert(IsSetUp());
    if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
    {
        (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->CheckForStoppingEvents();
    }
#endif //CHASTE_CVODE
}

void AbstractCellCycleModelOdeSolver::SetMaxSteps(long int numSteps)
{
#ifdef CHASTE_CVODE
    assert(IsSetUp());
    if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
    {
        (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->SetMaxSteps(numSteps);
    }
#endif //CHASTE_CVODE
}

void AbstractCellCycleModelOdeSolver::SetTolerances(double relTol, double absTol)
{
#ifdef CHASTE_CVODE
    assert(IsSetUp());
    if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
    {
        (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->SetTolerances(relTol, absTol);
    }
#endif //CHASTE_CVODE
}

bool AbstractCellCycleModelOdeSolver::IsAdaptive()
{
    bool adaptive = false;
#ifdef CHASTE_CVODE
    assert(IsSetUp());
    if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
    {
        adaptive = true;
    }
#endif //CHASTE_CVODE
    return adaptive;
}