AbstractPurkinjeCellFactory.hpp

/*

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*/

#ifndef ABSTRACTPURKINJECELLFACTORY_HPP_
#define ABSTRACTPURKINJECELLFACTORY_HPP_

#include "AbstractCardiacCellFactory.hpp"
#include "MixedDimensionMesh.hpp"
#include "FakeBathCell.hpp"
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class AbstractPurkinjeCellFactory : public AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>
{
private:
    void ReadJunctionsFile();

protected:
    MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* mpMixedDimensionMesh;

    std::set<unsigned> mLocalPurkinjeNodes;

    std::map<unsigned, double> mJunctionMap;

    virtual AbstractCardiacCellInterface* CreatePurkinjeCellForTissueNode(Node<SPACE_DIM>* pNode,
                                                                          AbstractCardiacCellInterface* pCardiacCell)=0;

    void CreateJunction(const Node<SPACE_DIM>* pNode,
                        AbstractCardiacCellInterface* pPurkinjeCell,
                        AbstractCardiacCellInterface* pCardiacCell,
                        double resistance);


    void CreateJunctionFromFile(const Node<SPACE_DIM>* pNode,
                                AbstractCardiacCellInterface* pPurkinjeCell,
                                AbstractCardiacCellInterface* pCardiacCell);


public:

    /* Constructor does nothing */
    AbstractPurkinjeCellFactory();


    void SetMesh(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh);

    AbstractCardiacCellInterface* CreatePurkinjeCellForNode(Node<SPACE_DIM>* pNode,
                                                            AbstractCardiacCellInterface* pCardiacCell);

    virtual void FinalisePurkinjeCellCreation(std::vector< AbstractCardiacCellInterface* >* pPurkinjeCellsDistributed,
                                              unsigned lo, unsigned hi)
    {
    }

    MixedDimensionMesh<ELEMENT_DIM,SPACE_DIM>* GetMixedDimensionMesh();
};



#endif // ABSTRACTPURKINJECELLFACTORY_HPP_