AbstractSrnModel.hpp

/*

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*/

#ifndef ABSTRACTSRN_HPP_
#define ABSTRACTSRN_HPP_

#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
#include "Identifiable.hpp"

#include <boost/serialization/base_object.hpp>

#include <vector>

#include "OutputFileHandler.hpp"
#include "SimulationTime.hpp"
#include "Cell.hpp"

class Cell; // Circular definition (cells need to know about SRN models and vice-versa)
typedef boost::shared_ptr<Cell> CellPtr;

class AbstractSrnModel : public Identifiable, boost::noncopyable
{
private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        // Make sure the SimulationTime singleton gets saved too
        SerializableSingleton<SimulationTime>* p_time_wrapper = SimulationTime::Instance()->GetSerializationWrapper();
        archive & p_time_wrapper;

        // DO NOT archive & mpCell; -- The SrnModel is only ever archived from the Cell
        // which knows this and it is handled in the load_construct of Cell.
        // doesn't seem to be anything we need to archive here...
        archive & mSimulatedToTime;
    }

protected:

    CellPtr mpCell;

    double mSimulatedToTime;

public:

    AbstractSrnModel();

    virtual ~AbstractSrnModel();

    void SetCell(CellPtr pCell);


    virtual void Initialise();

    virtual void InitialiseDaughterCell();

    CellPtr GetCell();

    void SetSimulatedToTime(double simulatedToTime);

    double GetSimulatedToTime();

    virtual void SimulateToCurrentTime()=0;

    virtual void ResetForDivision();

    virtual AbstractSrnModel* CreateSrnModel()=0;

    void OutputSrnModelInfo(out_stream& rParamsFile);

    virtual void OutputSrnModelParameters(out_stream& rParamsFile);
};

CLASS_IS_ABSTRACT(AbstractSrnModel)

#endif /* ABSTRACTSRN_HPP_ */