Chaste  Release::3.4
ActivationOutputModifier.hpp
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35 
36 #ifndef ACTIVATIONOUTPUTMODIFIER_HPP_
37 #define ACTIVATIONOUTPUTMODIFIER_HPP_
38 
39 #include "AbstractOutputModifier.hpp"
40 #include <boost/serialization/base_object.hpp>
41 #include <boost/serialization/vector.hpp>
42 
62 {
63 private:
64  double mThreshold;
65  unsigned mLocalSize;
66  std::vector<double> mFirstActivitationTimes;
67  std::vector<double> mFirstRecoveryTimes;
68  std::vector<double> mSecondActivitationTimes;
69  std::vector<double> mSecondRecoveryTimes;
71  friend class TestOutputModifiers;
72 
75 
76  template<class Archive>
77  void serialize(Archive & archive, const unsigned int version)
78  {
79  // This calls serialize on the base class.
80  archive & boost::serialization::base_object<AbstractOutputModifier>(*this);
81  archive & mThreshold;
82  // Other private data are re-initialised in a process-specific manner
83  }
84 
87  {}
88 
89 public:
98  ActivationOutputModifier(const std::string& rFilename, double threshold)
99  : AbstractOutputModifier(rFilename),
100  mThreshold(threshold)
101  {
102  }
103 
111  virtual void InitialiseAtStart(DistributedVectorFactory* pVectorFactory);
112 
116  virtual void FinaliseAtEnd();
117 
124  virtual void ProcessSolutionAtTimeStep(double time, Vec solution, unsigned problemDim);
125 };
126 
129 
130 #endif /* ACTIVATIONOUTPUTMODIFIER_HPP_ */
std::vector< double > mSecondRecoveryTimes
std::vector< double > mSecondActivitationTimes
virtual void ProcessSolutionAtTimeStep(double time, Vec solution, unsigned problemDim)
#define CHASTE_CLASS_EXPORT(T)
std::vector< double > mFirstRecoveryTimes
virtual void InitialiseAtStart(DistributedVectorFactory *pVectorFactory)
friend class boost::serialization::access
ActivationOutputModifier(const std::string &rFilename, double threshold)
std::vector< double > mFirstActivitationTimes