ActivationOutputModifier.hpp

/*

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*/

#ifndef ACTIVATIONOUTPUTMODIFIER_HPP_
#define ACTIVATIONOUTPUTMODIFIER_HPP_

#include "AbstractOutputModifier.hpp"
#include <boost/serialization/base_object.hpp>
#include <boost/serialization/vector.hpp>

class ActivationOutputModifier : public AbstractOutputModifier
{
private:
    double mThreshold; 
    unsigned mLocalSize; 
    std::vector<double> mFirstActivitationTimes; 
    std::vector<double> mFirstRecoveryTimes; 
    std::vector<double> mSecondActivitationTimes; 
    std::vector<double> mSecondRecoveryTimes; 
    friend class TestOutputModifiers;

    friend class boost::serialization::access;

    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        // This calls serialize on the base class.
        archive & boost::serialization::base_object<AbstractOutputModifier>(*this);
        archive & mThreshold;
        // Other private data are re-initialised in a process-specific manner
    }

    ActivationOutputModifier()
    {}

public:
    ActivationOutputModifier(const std::string& rFilename, double threshold)
        : AbstractOutputModifier(rFilename),
          mThreshold(threshold)
    {
    }

    virtual void InitialiseAtStart(DistributedVectorFactory* pVectorFactory);

    virtual void FinaliseAtEnd();

    virtual void ProcessSolutionAtTimeStep(double time, Vec solution, unsigned problemDim);
};

#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(ActivationOutputModifier)

#endif /* ACTIVATIONOUTPUTMODIFIER_HPP_ */