CellDeltaNotchWriter.cpp

/*

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*/

#include "CellDeltaNotchWriter.hpp"
#include "AbstractCellPopulation.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellDeltaNotchWriter<ELEMENT_DIM, SPACE_DIM>::CellDeltaNotchWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("celldeltanotch.dat")
{
    this->mVtkCellDataName = "Cell delta";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellDeltaNotchWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double delta = pCell->GetCellData()->GetItem("delta");
    return delta;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellDeltaNotchWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    // Output the location index corresponding to this cell
    unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
    *this->mpOutStream << location_index << " ";

    // Output this cell's ID
    unsigned cell_id = pCell->GetCellId();
    *this->mpOutStream << cell_id << " ";

    // Output the position of this cell's centre
    c_vector<double, SPACE_DIM> centre_location = pCellPopulation->GetLocationOfCellCentre(pCell);
    for (unsigned i=0; i<SPACE_DIM; i++)
    {
        *this->mpOutStream << centre_location[i] << " ";
    }

    // Output this cell's level of delta
    double delta = pCell->GetCellData()->GetItem("delta");
    *this->mpOutStream << delta << " ";

    // Output this cell's level of notch
    double notch = pCell->GetCellData()->GetItem("notch");
    *this->mpOutStream << notch << " ";

    // Output the mean level of delta among this cell's neighbours
    double mean_delta = pCell->GetCellData()->GetItem("mean delta");
    *this->mpOutStream << mean_delta << " ";
}

// Explicit instantiation
template class CellDeltaNotchWriter<1,1>;
template class CellDeltaNotchWriter<1,2>;
template class CellDeltaNotchWriter<2,2>;
template class CellDeltaNotchWriter<1,3>;
template class CellDeltaNotchWriter<2,3>;
template class CellDeltaNotchWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellDeltaNotchWriter)