CellRosetteRankWriter.cpp

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*/

#include "CellRosetteRankWriter.hpp"
#include "AbstractCellPopulation.hpp"
#include "VertexBasedCellPopulation.hpp"
#include "Exception.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellRosetteRankWriter<ELEMENT_DIM, SPACE_DIM>::CellRosetteRankWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("cellrosetterank.dat")
{
    this->mVtkCellDataName = "Cell rosette rank";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellRosetteRankWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    // We first need to test that the cell population is vertex-based
    VertexBasedCellPopulation<SPACE_DIM>* p_vbcp = dynamic_cast<VertexBasedCellPopulation<SPACE_DIM>*>(pCellPopulation);

    if (p_vbcp == NULL)
    {
        EXCEPTION("Rosettte rank is only associated with vertex-based cell populations");
    }

    // Get and return the rosette rank
    unsigned rosette_rank = p_vbcp->GetRosetteRankOfCell(pCell);

    return double(rosette_rank);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRosetteRankWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
    unsigned cell_id = pCell->GetCellId();
    c_vector<double, SPACE_DIM> centre_location = pCellPopulation->GetLocationOfCellCentre(pCell);

    double rosette_rank = this->GetCellDataForVtkOutput(pCell, pCellPopulation);

    *this->mpOutStream << location_index << " " << cell_id << " ";
    for (unsigned i=0; i<SPACE_DIM; i++)
    {
        *this->mpOutStream << centre_location[i] << " ";
    }

    *this->mpOutStream << rosette_rank << " ";
}

// Explicit instantiation
template class CellRosetteRankWriter<1,1>;
template class CellRosetteRankWriter<1,2>;
template class CellRosetteRankWriter<2,2>;
template class CellRosetteRankWriter<1,3>;
template class CellRosetteRankWriter<2,3>;
template class CellRosetteRankWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellRosetteRankWriter)