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CheckMonoLr91Vars.hpp
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/*
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Copyright (c) 2005-2016, University of Oxford.
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All rights reserved.
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University of Oxford means the Chancellor, Masters and Scholars of the
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University of Oxford, having an administrative office at Wellington
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Square, Oxford OX1 2JD, UK.
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This file is part of Chaste.
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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* Redistributions of source code must retain the above copyright notice,
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this list of conditions and the following disclaimer.
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* Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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* Neither the name of the University of Oxford nor the names of its
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contributors may be used to endorse or promote products derived from this
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software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
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LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
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CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
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GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
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HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
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LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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*/
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#ifndef CHECKMONOLR91VARS_HPP_
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#define CHECKMONOLR91VARS_HPP_
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#include "MonodomainProblem.hpp"
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template
<
unsigned
ELEMENT_DIM,
unsigned
SPACE_DIM>
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void
CheckMonoLr91Vars(
MonodomainProblem<ELEMENT_DIM, SPACE_DIM>
& problem)
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{
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DistributedVector
voltage = problem.
rGetMesh
().GetDistributedVectorFactory()->CreateDistributedVector(problem.
GetSolution
());
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for
(
DistributedVector::Iterator
index = voltage.
Begin
();
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index != voltage.
End
();
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++index)
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{
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// assuming LR model has Ena = 54.4 and Ek = -77
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double
Ena = 54.4;
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double
Ek = -77.0;
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TS_ASSERT_LESS_THAN_EQUALS( voltage[index] , Ena + 30);
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TS_ASSERT_LESS_THAN_EQUALS(-voltage[index] + (Ek-30), 0);
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std::vector<double> ode_vars = problem.
GetMonodomainTissue
()->GetCardiacCell(index.Global)->GetStdVecStateVariables();
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for
(
int
j=0; j<8; j++)
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{
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// if not voltage or calcium ion conc, test whether between 0 and 1
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if
((j!=0) && (j!=7))
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{
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TS_ASSERT_LESS_THAN_EQUALS( ode_vars[j], 1.0);
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TS_ASSERT_LESS_THAN_EQUALS( -ode_vars[j], 0.0);
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}
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}
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}
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}
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#endif
/*CHECKMONOLR91VARS_HPP_*/
MonodomainProblem::GetMonodomainTissue
MonodomainTissue< ELEMENT_DIM, SPACE_DIM > * GetMonodomainTissue()
Definition:
MonodomainProblem.cpp:99
DistributedVector::Iterator
Definition:
DistributedVector.hpp:167
AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::rGetMesh
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > & rGetMesh()
DistributedVector::End
Iterator End()
Definition:
DistributedVector.cpp:132
DistributedVector
Definition:
DistributedVector.hpp:55
AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >::GetSolution
Vec GetSolution()
MonodomainProblem
Definition:
MonodomainProblem.hpp:54
DistributedVector::Begin
Iterator Begin()
Definition:
DistributedVector.cpp:124
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CheckMonoLr91Vars.hpp
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