MonodomainProblem.hpp

/*

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*/


#ifndef MONODOMAINPROBLEM_HPP_
#define MONODOMAINPROBLEM_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractCardiacProblem.hpp"
#include "AbstractCardiacTissue.hpp"
#include "AbstractDynamicLinearPdeSolver.hpp"
#include "AbstractCardiacCellFactory.hpp"
#include "MonodomainTissue.hpp"


template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
class MonodomainProblem : public AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 1>
{
private:
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCardiacProblem<ELEMENT_DIM, SPACE_DIM, 1> >(*this);
        archive & mpMonodomainTissue;
    }

protected:
    MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* mpMonodomainTissue;

public:
    AbstractCardiacTissue<ELEMENT_DIM, SPACE_DIM>* CreateCardiacTissue();

    AbstractDynamicLinearPdeSolver<ELEMENT_DIM, SPACE_DIM, 1>* CreateSolver();

    MonodomainProblem(AbstractCardiacCellFactory<ELEMENT_DIM,SPACE_DIM>* pCellFactory);

    MonodomainProblem();

    virtual ~MonodomainProblem();

    MonodomainTissue<ELEMENT_DIM,SPACE_DIM> * GetMonodomainTissue();

    void WriteInfo(double time);

    virtual void DefineWriterColumns(bool extending);

    virtual void WriteOneStep(double time, Vec voltageVec);

};

#include "SerializationExportWrapper.hpp" // Must be last
EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 1)
EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 2)
EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 1, 3)
EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 2, 2)
EXPORT_TEMPLATE_CLASS2(MonodomainProblem, 3, 3)

#endif /*MONODOMAINPROBLEM_HPP_*/